Variant report

Variant	rs73490137
Chromosome Location	chr11:63291825-63291826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11231500	1.00[AMR][1000 genomes]
rs11231503	1.00[AMR][1000 genomes]
rs11231505	1.00[AMR][1000 genomes]
rs12280931	1.00[AMR][1000 genomes]
rs12292672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63275600-63296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63284600-63296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:63284800-63299000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:63289000-63298800	Weak transcription	Stomach Mucosa	stomach
5	chr11:63290800-63292000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:63291000-63292400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:63291000-63295200	Weak transcription	Placenta	Placenta
8	chr11:63291400-63292400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr11:63291600-63292200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
10	chr11:63291600-63292400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr11:63291800-63292000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr11:63291800-63292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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