Variant report

Variant	rs73490402
Chromosome Location	chr7:140212505-140212506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140177891..140180376-chr7:140211143..140213801,3	MCF-7	breast:
2	chr7:140211069..140212654-chr7:140215627..140217284,2	MCF-7	breast:
3	chr7:140177326..140179506-chr7:140211313..140213860,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv437576	chr7:140182985-140217670	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1033685	chr7:140197079-140224303	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1032716	chr7:140198540-140214067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1018535	chr7:140198540-140224303	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv971147	chr7:140212384-140219526	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140205800-140225400	Weak transcription	Spleen	Spleen
2	chr7:140206800-140233200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
4	chr7:140207200-140216600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:140207200-140217200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:140207200-140217400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:140207200-140217400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:140207200-140217400	Weak transcription	Fetal Lung	lung
9	chr7:140207200-140218000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:140207200-140218000	Weak transcription	NHLF	lung
11	chr7:140207200-140219200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:140207800-140217200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:140207800-140218000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:140208000-140215000	Weak transcription	Fetal Stomach	stomach
15	chr7:140208000-140217200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:140208000-140218000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr7:140208400-140213800	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:140208600-140219200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:140209000-140217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:140210800-140220000	Weak transcription	Brain Anterior Caudate	brain
21	chr7:140211600-140225600	Weak transcription	NH-A	brain
22	chr7:140211800-140212600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:140211800-140212600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:140211800-140212600	Enhancers	Duodenum Mucosa	Duodenum
25	chr7:140211800-140212800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:140211800-140212800	Enhancers	Placenta	Placenta
27	chr7:140211800-140212800	Enhancers	K562	blood
28	chr7:140212000-140212600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:140212000-140212800	Enhancers	Fetal Muscle Trunk	muscle
30	chr7:140212200-140212600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:140212200-140212600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr7:140212200-140212600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr7:140212200-140212600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:140212200-140212600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:140212200-140212600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:140212200-140212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:140212200-140212600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:140212200-140212600	Enhancers	Esophagus	oesophagus
39	chr7:140212200-140212600	Enhancers	Fetal Intestine Large	intestine
40	chr7:140212200-140212600	Enhancers	Left Ventricle	heart
41	chr7:140212200-140212600	Enhancers	Lung	lung
42	chr7:140212200-140212600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr7:140212200-140212600	Enhancers	Right Atrium	heart
44	chr7:140212200-140212600	Enhancers	Right Ventricle	heart
45	chr7:140212200-140212600	Flanking Active TSS	Hela-S3	cervix
46	chr7:140212200-140212800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr7:140212200-140212800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr7:140212200-140212800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr7:140212200-140212800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:140212200-140212800	Enhancers	Adipose Nuclei	Adipose

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