Variant report

Variant	rs73491958
Chromosome Location	chr11:85159718-85159719
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84911038..84912682-chr11:85158292..85160996,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57058565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60170831	1.00[AMR][1000 genomes]
rs60378440	1.00[AMR][1000 genomes]
rs60753268	1.00[AMR][1000 genomes]
rs60915163	1.00[AMR][1000 genomes]
rs73491951	0.84[AFR][1000 genomes]
rs73491953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491954	1.00[AMR][1000 genomes]
rs73491957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491977	1.00[AMR][1000 genomes]
rs73499116	1.00[AMR][1000 genomes]
rs73499125	1.00[AMR][1000 genomes]
rs73499129	1.00[AMR][1000 genomes]
rs73499149	1.00[AMR][1000 genomes]
rs73503516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73503539	1.00[AMR][1000 genomes]
rs73503543	1.00[AMR][1000 genomes]
rs73503550	1.00[AMR][1000 genomes]
rs73503557	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85155800-85160800	Weak transcription	Psoas Muscle	Psoas
2	chr11:85159400-85160200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links