Variant report

Variant	rs73492857
Chromosome Location	chr11:75093269-75093270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75087482..75089138-chr11:75092873..75094473,2	K562	blood:
2	chr11:75039518..75040453-chr11:75093120..75094081,2	MCF-7	breast:
3	chr11:75092274..75095773-chr11:75096854..75099923,3	K562	blood:
4	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:
5	chr11:75092197..75094711-chr11:75109480..75112038,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11823994	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11824884	0.87[EUR][1000 genomes]
rs34281218	0.83[EUR][1000 genomes]
rs56335064	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61499806	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7131128	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv993873	chr11:75090965-75093952	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75081200-75095200	Weak transcription	Dnd41	blood
2	chr11:75083600-75094200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
4	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:75090400-75096000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:75091400-75094200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:75091400-75096000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:75092000-75093600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:75092000-75094200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:75092000-75095400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:75092000-75098200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:75092000-75099400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:75092200-75094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:75092200-75094200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:75092200-75095400	Weak transcription	Liver	Liver
16	chr11:75092200-75095400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:75092200-75095400	Weak transcription	Fetal Stomach	stomach
18	chr11:75092200-75095400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:75092200-75095400	Weak transcription	Hela-S3	cervix
20	chr11:75092200-75095600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:75092200-75098000	Weak transcription	HSMMtube	muscle
22	chr11:75092200-75099400	Weak transcription	Pancreas	Pancrea
23	chr11:75092400-75093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:75092400-75093600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:75092400-75094200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:75092400-75094200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:75092400-75094200	Weak transcription	A549	lung
28	chr11:75092400-75095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:75092400-75095400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:75092400-75095400	Weak transcription	Adipose Nuclei	Adipose
31	chr11:75092400-75095400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:75092400-75095400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:75092400-75095400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:75092400-75095400	Weak transcription	K562	blood
35	chr11:75092400-75095600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:75092400-75095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:75092400-75098400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:75092400-75099400	Weak transcription	Colonic Mucosa	Colon
39	chr11:75092400-75099400	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:75092400-75099400	Weak transcription	Spleen	Spleen
41	chr11:75092600-75093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:75092600-75093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:75092600-75095400	Weak transcription	Fetal Intestine Large	intestine
44	chr11:75092800-75095400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:75093000-75094200	Weak transcription	Primary B cells from cord blood	blood
46	chr11:75093000-75094200	Weak transcription	Placenta	Placenta
47	chr11:75093000-75095400	Weak transcription	Fetal Intestine Small	intestine
48	chr11:75093000-75095600	Weak transcription	Stomach Mucosa	stomach
49	chr11:75093000-75098200	Weak transcription	Lung	lung

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