Variant report

Variant	rs73493679
Chromosome Location	chr9:103117082-103117083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr9:103116341-103117265	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103112743..103119519-chr9:103186928..103191502,9	MCF-7	breast:
2	chr9:103113751..103117482-chr9:103187755..103190910,6	K562	blood:

Variant related genes	Relation type
TEX10	TF binding region
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28645211	1.00[AMR][1000 genomes]
rs56153123	1.00[AMR][1000 genomes]
rs73491407	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103115800-103117800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:103115800-103119400	Weak transcription	Ovary	ovary
3	chr9:103115800-103119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:103115800-103119800	Weak transcription	HUVEC	blood vessel
5	chr9:103116000-103117400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:103116200-103117600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:103116200-103117800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:103116200-103118200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:103116200-103118400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr9:103116200-103118600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:103116200-103118800	Weak transcription	Right Ventricle	heart
12	chr9:103116200-103119200	Weak transcription	NHEK	skin
13	chr9:103116200-103119800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:103116200-103122400	Weak transcription	Fetal Heart	heart
15	chr9:103116200-103123400	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:103116200-103126000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:103116400-103117200	ZNF genes & repeats	K562	blood
18	chr9:103116400-103117600	Weak transcription	A549	lung
19	chr9:103116400-103118200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr9:103116400-103118400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:103116400-103118600	Weak transcription	Fetal Kidney	kidney
22	chr9:103116400-103119200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:103116600-103117200	Enhancers	HepG2	liver
24	chr9:103116600-103117400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:103116600-103120800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:103116600-103131000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:103116800-103117400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr9:103116800-103117400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:103116800-103117600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:103116800-103120600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:103117000-103117200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr9:103117000-103117400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:103117000-103117400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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