Variant report

Variant	rs73495021
Chromosome Location	chr13:49022531-49022532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr13:49022511-49022794	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr13:49022414-49023420	MCF10A-Er-Src	breast:	n/a	chr13:49022600-49022610 chr13:49022560-49022567 chr13:49023202-49023213 chr13:49023202-49023209 chr13:49022600-49022610 chr13:49022600-49022610
3	FOS	chr13:49022494-49022780	MCF10A-Er-Src	breast:	n/a	chr13:49022600-49022610 chr13:49022560-49022567 chr13:49022600-49022610 chr13:49022600-49022610
4	FOS	chr13:49022432-49023420	MCF10A-Er-Src	breast:	n/a	chr13:49022600-49022610 chr13:49022560-49022567 chr13:49023202-49023213 chr13:49023202-49023209 chr13:49022600-49022610 chr13:49022600-49022610
5	STAT3	chr13:49022349-49022573	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr13:49022473-49023394	HUVEC	blood vessel:	n/a	chr13:49022600-49022610 chr13:49022560-49022567 chr13:49023202-49023213 chr13:49023202-49023209 chr13:49022600-49022610 chr13:49022600-49022610

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49022434..49024541-chr13:49024790..49027245,2	K562	blood:
2	chr13:49021166..49023962-chr13:49028284..49030489,2	K562	blood:

Variant related genes	Relation type
LPAR6	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs4151632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57800689	0.83[AFR][1000 genomes]
rs60240141	0.83[AFR][1000 genomes]
rs73479211	0.83[AFR][1000 genomes]
rs73479233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486829	1.00[AMR][1000 genomes]
rs73486850	1.00[AMR][1000 genomes]
rs73486858	1.00[AMR][1000 genomes]
rs73486870	1.00[AMR][1000 genomes]
rs73491100	0.83[AFR][1000 genomes]
rs73492989	0.83[AFR][1000 genomes]
rs73492996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493007	0.83[AFR][1000 genomes]
rs73493010	0.83[AFR][1000 genomes]
rs73493016	0.83[AFR][1000 genomes]
rs73493018	0.83[AFR][1000 genomes]
rs73493070	0.83[AFR][1000 genomes]
rs73493076	0.83[AFR][1000 genomes]
rs73495107	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48990800-49030800	Weak transcription	Ovary	ovary
2	chr13:48991400-49030600	Weak transcription	Spleen	Spleen
3	chr13:48999000-49024400	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:49001400-49024600	Weak transcription	Fetal Intestine Small	intestine
5	chr13:49003600-49023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:49006800-49030400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:49007000-49027600	Weak transcription	Primary T cells from cord blood	blood
8	chr13:49008000-49028600	Weak transcription	HepG2	liver
9	chr13:49008800-49030800	Weak transcription	Placenta	Placenta
10	chr13:49009000-49030600	Weak transcription	Gastric	stomach
11	chr13:49009000-49030600	Weak transcription	Lung	lung
12	chr13:49011200-49028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:49011400-49022800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:49011800-49023600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr13:49012000-49022800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:49012000-49023400	Weak transcription	Small Intestine	intestine
17	chr13:49012000-49027400	Weak transcription	Left Ventricle	heart
18	chr13:49012000-49028800	Weak transcription	Pancreas	Pancrea
19	chr13:49012400-49024400	Weak transcription	Fetal Heart	heart
20	chr13:49015200-49027400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:49017400-49062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:49018000-49024000	Strong transcription	Dnd41	blood
23	chr13:49018000-49062400	Weak transcription	Fetal Brain Male	brain
24	chr13:49018200-49022800	Weak transcription	Fetal Lung	lung
25	chr13:49018400-49025200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr13:49018600-49023800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr13:49019000-49030600	Weak transcription	Fetal Stomach	stomach
28	chr13:49019200-49022600	Weak transcription	GM12878-XiMat	blood
29	chr13:49019800-49023600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:49019800-49024000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr13:49020000-49024000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr13:49020000-49028600	Weak transcription	Thymus	Thymus
33	chr13:49020200-49022800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr13:49020200-49023200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr13:49020400-49022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:49020400-49023000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr13:49020400-49023800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:49020400-49024000	Enhancers	NHDF-Ad	bronchial
39	chr13:49020800-49022600	Strong transcription	Primary B cells from cord blood	blood
40	chr13:49020800-49062000	Weak transcription	Fetal Kidney	kidney
41	chr13:49021000-49022600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:49021000-49027000	Weak transcription	Colon Smooth Muscle	Colon
43	chr13:49021000-49027400	Weak transcription	Fetal Thymus	thymus
44	chr13:49021200-49022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:49021200-49022800	Enhancers	HUVEC	blood vessel
46	chr13:49021200-49022800	Weak transcription	NH-A	brain
47	chr13:49021200-49027600	Weak transcription	Aorta	Aorta
48	chr13:49021200-49027600	Weak transcription	HSMMtube	muscle
49	chr13:49021200-49058600	Weak transcription	Hela-S3	cervix
50	chr13:49021400-49022600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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