Variant report

Variant	rs73495023
Chromosome Location	chr13:49023698-49023699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49022434..49024541-chr13:49024790..49027245,2	K562	blood:
2	chr13:49021166..49023962-chr13:49028284..49030489,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59931363	1.00[AFR][1000 genomes]
rs61563834	0.83[AFR][1000 genomes]
rs73486881	0.83[AFR][1000 genomes]
rs73486884	0.83[AFR][1000 genomes]
rs73489018	0.83[AFR][1000 genomes]
rs73491077	0.83[AFR][1000 genomes]
rs73491078	0.83[AFR][1000 genomes]
rs73493004	0.83[AFR][1000 genomes]
rs73493053	0.83[AFR][1000 genomes]
rs73493074	0.83[AFR][1000 genomes]
rs73493084	1.00[AFR][1000 genomes]
rs73493090	0.83[AFR][1000 genomes]
rs73495103	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48990800-49030800	Weak transcription	Ovary	ovary
2	chr13:48991400-49030600	Weak transcription	Spleen	Spleen
3	chr13:48999000-49024400	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:49001400-49024600	Weak transcription	Fetal Intestine Small	intestine
5	chr13:49006800-49030400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:49007000-49027600	Weak transcription	Primary T cells from cord blood	blood
7	chr13:49008000-49028600	Weak transcription	HepG2	liver
8	chr13:49008800-49030800	Weak transcription	Placenta	Placenta
9	chr13:49009000-49030600	Weak transcription	Gastric	stomach
10	chr13:49009000-49030600	Weak transcription	Lung	lung
11	chr13:49011200-49028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:49012000-49027400	Weak transcription	Left Ventricle	heart
13	chr13:49012000-49028800	Weak transcription	Pancreas	Pancrea
14	chr13:49012400-49024400	Weak transcription	Fetal Heart	heart
15	chr13:49015200-49027400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:49017400-49062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr13:49018000-49024000	Strong transcription	Dnd41	blood
18	chr13:49018000-49062400	Weak transcription	Fetal Brain Male	brain
19	chr13:49018400-49025200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr13:49018600-49023800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:49019000-49030600	Weak transcription	Fetal Stomach	stomach
22	chr13:49019800-49024000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:49020000-49024000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:49020000-49028600	Weak transcription	Thymus	Thymus
25	chr13:49020400-49023800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:49020400-49024000	Enhancers	NHDF-Ad	bronchial
27	chr13:49020800-49062000	Weak transcription	Fetal Kidney	kidney
28	chr13:49021000-49027000	Weak transcription	Colon Smooth Muscle	Colon
29	chr13:49021000-49027400	Weak transcription	Fetal Thymus	thymus
30	chr13:49021200-49027600	Weak transcription	Aorta	Aorta
31	chr13:49021200-49027600	Weak transcription	HSMMtube	muscle
32	chr13:49021200-49058600	Weak transcription	Hela-S3	cervix
33	chr13:49021400-49030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:49022200-49023800	Enhancers	HMEC	breast
35	chr13:49022200-49024000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:49022200-49024000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr13:49022200-49024000	Enhancers	NHLF	lung
38	chr13:49022400-49023800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr13:49022400-49023800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr13:49022400-49023800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr13:49022400-49023800	Enhancers	NHEK	skin
42	chr13:49022400-49024000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr13:49022400-49024000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:49022400-49024000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr13:49022400-49024200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr13:49022600-49024000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:49022800-49023800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:49022800-49023800	Enhancers	NH-A	brain
49	chr13:49023200-49023800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr13:49023200-49024000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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