Variant report

Variant	rs73495147
Chromosome Location	chr13:49250330-49250331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59931363	1.00[AFR][1000 genomes]
rs61563834	0.83[AFR][1000 genomes]
rs73486881	0.83[AFR][1000 genomes]
rs73486884	0.83[AFR][1000 genomes]
rs73489018	0.83[AFR][1000 genomes]
rs73491077	0.83[AFR][1000 genomes]
rs73491078	0.83[AFR][1000 genomes]
rs73493004	0.83[AFR][1000 genomes]
rs73493053	0.83[AFR][1000 genomes]
rs73493074	0.83[AFR][1000 genomes]
rs73493084	1.00[AFR][1000 genomes]
rs73493090	0.83[AFR][1000 genomes]
rs73495103	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1033	chr13:49241446-49250564	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49242600-49251000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:49248200-49252800	Enhancers	Dnd41	blood
3	chr13:49248600-49250400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:49249600-49250800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:49250200-49250800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:49250200-49251800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links