Variant report

Variant	rs73495413
Chromosome Location	chr11:76242558-76242559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76236620..76239577-chr11:76240706..76242619,2	MCF-7	breast:
2	chr11:76242469..76244011-chr11:76244453..76247142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs57852089	0.81[AFR][1000 genomes]
rs59388706	1.00[AFR][1000 genomes]
rs73493413	0.81[AFR][1000 genomes]
rs73493421	0.90[AFR][1000 genomes]
rs73493425	0.90[AFR][1000 genomes]
rs73493426	0.90[AFR][1000 genomes]
rs73493432	0.90[AFR][1000 genomes]
rs73493433	0.90[AFR][1000 genomes]
rs73493439	0.81[AFR][1000 genomes]
rs73493458	1.00[AFR][1000 genomes]
rs73493461	1.00[AFR][1000 genomes]
rs73493462	1.00[AFR][1000 genomes]
rs73493465	1.00[AFR][1000 genomes]
rs73493468	1.00[AFR][1000 genomes]
rs73493471	1.00[AFR][1000 genomes]
rs73493478	1.00[AFR][1000 genomes]
rs73493480	1.00[AFR][1000 genomes]
rs73493487	1.00[AFR][1000 genomes]
rs73493493	1.00[AFR][1000 genomes]
rs73493495	1.00[AFR][1000 genomes]
rs73493496	1.00[AFR][1000 genomes]
rs73493497	1.00[AFR][1000 genomes]
rs73495404	1.00[AFR][1000 genomes]
rs73495406	0.90[AFR][1000 genomes]
rs73495408	0.90[AFR][1000 genomes]
rs73495410	1.00[AFR][1000 genomes]
rs73495414	1.00[AFR][1000 genomes]
rs73495416	1.00[AFR][1000 genomes]
rs73495417	1.00[AFR][1000 genomes]
rs73495419	1.00[AFR][1000 genomes]
rs73495421	1.00[AFR][1000 genomes]
rs73495423	1.00[AFR][1000 genomes]
rs73495426	1.00[AFR][1000 genomes]
rs73495428	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
3	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
4	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
6	chr11:76207400-76254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:76213000-76254200	Weak transcription	Fetal Heart	heart
8	chr11:76220000-76255600	Weak transcription	Small Intestine	intestine
9	chr11:76222200-76252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:76222600-76249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:76224200-76254600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:76224400-76262600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:76224400-76263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:76224800-76251200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:76225400-76253200	Weak transcription	HSMMtube	muscle
16	chr11:76230000-76265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:76232800-76245000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:76233000-76249200	Weak transcription	Fetal Stomach	stomach
19	chr11:76233600-76251000	Strong transcription	Primary B cells from cord blood	blood
20	chr11:76233600-76258800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:76233800-76258600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:76233800-76260200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:76233800-76262000	Strong transcription	Placenta	Placenta
24	chr11:76233800-76262400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:76233800-76262600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:76233800-76263200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:76234000-76245200	Strong transcription	Fetal Thymus	thymus
28	chr11:76234000-76245400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:76234000-76262600	Strong transcription	Dnd41	blood
30	chr11:76234200-76250800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:76234200-76251200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr11:76234200-76262000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:76234400-76243400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:76234600-76246400	Weak transcription	Fetal Brain Male	brain
35	chr11:76234800-76263000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:76235800-76243200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:76236000-76247400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:76236000-76254400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:76236000-76254400	Weak transcription	Gastric	stomach
40	chr11:76236200-76248800	Weak transcription	Ovary	ovary
41	chr11:76236200-76249200	Weak transcription	Fetal Intestine Small	intestine
42	chr11:76236200-76249200	Weak transcription	Lung	lung
43	chr11:76236200-76249400	Weak transcription	Spleen	Spleen
44	chr11:76236200-76253200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:76236200-76254400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:76236200-76254400	Weak transcription	Pancreas	Pancrea
47	chr11:76236400-76242800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:76236400-76243000	Weak transcription	NHEK	skin
49	chr11:76236400-76243800	Weak transcription	K562	blood
50	chr11:76236400-76245000	Weak transcription	NHLF	lung

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