Variant report

Variant	rs7349554
Chromosome Location	chr3:119105663-119105664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:32886187..32888712-chr3:119104098..119107101,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10049044	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13078855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3962	chr3:119094646-119135321	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:119072000-119109200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:119072000-119133800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:119072200-119109600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:119072200-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:119076400-119109200	Weak transcription	Colonic Mucosa	Colon
7	chr3:119076400-119109200	Weak transcription	Esophagus	oesophagus
8	chr3:119078800-119111400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:119079400-119109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:119079800-119110000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:119080000-119145600	Weak transcription	Fetal Kidney	kidney
12	chr3:119081200-119135600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:119081400-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:119082800-119138000	Weak transcription	Small Intestine	intestine
15	chr3:119085000-119109200	Weak transcription	Pancreas	Pancrea
16	chr3:119085200-119139000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:119086400-119110000	Weak transcription	Fetal Thymus	thymus
18	chr3:119088000-119134200	Weak transcription	NHDF-Ad	bronchial
19	chr3:119088200-119122400	Weak transcription	Brain Angular Gyrus	brain
20	chr3:119088600-119109200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:119091800-119109200	Weak transcription	Gastric	stomach
22	chr3:119093000-119116200	Weak transcription	Psoas Muscle	Psoas
23	chr3:119094400-119119600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:119094600-119108800	Weak transcription	Fetal Intestine Large	intestine
25	chr3:119097000-119132600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:119097200-119109800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:119097600-119109400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:119097600-119120600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:119098000-119136800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:119098400-119111400	Weak transcription	Liver	Liver
31	chr3:119098400-119138200	Strong transcription	Adipose Nuclei	Adipose
32	chr3:119098600-119137400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:119098800-119106200	Strong transcription	Left Ventricle	heart
34	chr3:119099000-119126200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:119099200-119105800	Strong transcription	HUVEC	blood vessel
36	chr3:119099200-119110000	Weak transcription	HMEC	breast
37	chr3:119099200-119111200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:119099200-119120600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:119099600-119106000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:119099600-119124800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:119099800-119114200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:119099800-119114200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:119100000-119115400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:119100000-119118200	Weak transcription	Fetal Heart	heart
45	chr3:119100000-119132600	Weak transcription	Primary B cells from cord blood	blood
46	chr3:119100200-119110000	Weak transcription	Brain Anterior Caudate	brain
47	chr3:119100200-119114600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:119100400-119109400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:119102000-119109600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:119102200-119107200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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