Variant report

Variant	rs73495561
Chromosome Location	chr11:34274646-34274647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73493591	1.00[AFR][1000 genomes]
rs73495529	1.00[AFR][1000 genomes]
rs73495545	1.00[AFR][1000 genomes]
rs73495557	1.00[AFR][1000 genomes]
rs73495580	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34268200-34274800	Enhancers	Fetal Thymus	thymus
2	chr11:34272400-34274800	Enhancers	Brain Substantia Nigra	brain
3	chr11:34272800-34274800	Enhancers	Right Ventricle	heart
4	chr11:34272800-34275000	Enhancers	Pancreas	Pancrea
5	chr11:34273000-34277800	Weak transcription	Aorta	Aorta
6	chr11:34273200-34275200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:34273200-34276600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:34273200-34284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:34273200-34284600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:34273400-34275200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:34273400-34275200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:34273400-34275600	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:34273400-34277400	Weak transcription	Fetal Lung	lung
14	chr11:34273800-34275000	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:34273800-34275200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr11:34273800-34275400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:34273800-34275400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:34273800-34277200	Weak transcription	Left Ventricle	heart
19	chr11:34273800-34279400	Weak transcription	Brain Anterior Caudate	brain
20	chr11:34274000-34274800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr11:34274000-34275000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:34274000-34275200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:34274000-34275200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:34274000-34275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:34274000-34275400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:34274000-34275400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:34274000-34276600	Weak transcription	Placenta	Placenta
28	chr11:34274000-34277400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:34274000-34277400	Weak transcription	Right Atrium	heart
30	chr11:34274000-34278000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:34274000-34280600	Weak transcription	HepG2	liver
32	chr11:34274000-34283400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:34274000-34284600	Weak transcription	NHEK	skin
34	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
35	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
36	chr11:34274200-34277400	Weak transcription	Fetal Heart	heart
37	chr11:34274200-34277800	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:34274200-34287600	Weak transcription	HSMM	muscle
39	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:34274600-34276800	Weak transcription	Hela-S3	cervix
41	chr11:34274600-34283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:34274600-34283400	Weak transcription	Psoas Muscle	Psoas
43	chr11:34274600-34285000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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