Variant report

Variant	rs73496104
Chromosome Location	chr13:62823978-62823979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56129155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59176250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496138	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73496142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561893	chr13:62807570-62885877	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62818000-62824000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links