Variant report

Variant	rs73496787
Chromosome Location	chr6:100935808-100935809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12663321	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12663539	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17054156	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17060650	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17060652	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3756915	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3798485	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56681764	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73496769	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73496776	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7746426	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100932800-100936000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:100933200-100936000	Weak transcription	HSMMtube	muscle
3	chr6:100933200-100936200	Weak transcription	HSMM	muscle
4	chr6:100933800-100936000	Weak transcription	GM12878-XiMat	blood
5	chr6:100935800-100936200	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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