Variant report

Variant	rs73497519
Chromosome Location	chr6:87647884-87647885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61382598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018878	chr6:86778852-87691755	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1031639	chr6:86815397-87721507	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87646400-87648000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:87646400-87648000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:87646600-87648000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:87646600-87648000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:87646600-87648000	Active TSS	Gastric	stomach
6	chr6:87646600-87648200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:87646600-87648800	Active TSS	Brain Angular Gyrus	brain
8	chr6:87646600-87648800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
9	chr6:87646800-87648800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:87647400-87649000	Active TSS	Brain Anterior Caudate	brain
11	chr6:87647600-87648000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:87647600-87648000	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr6:87647600-87648200	Bivalent Enhancer	Fetal Lung	lung
14	chr6:87647600-87649200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:87647600-87649600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:87647800-87648000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr6:87647800-87648000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:87647800-87648000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:87647800-87648000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
20	chr6:87647800-87648000	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:87647800-87648400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr6:87647800-87648400	Active TSS	Ovary	ovary
23	chr6:87647800-87648400	Enhancers	HepG2	liver
24	chr6:87647800-87648800	Active TSS	Brain Hippocampus Middle	brain

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