Variant report

Variant	rs73497985
Chromosome Location	chr7:140665044-140665045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10247116	0.81[ASN][1000 genomes]
rs10251628	0.86[EUR][1000 genomes]
rs10269699	0.81[ASN][1000 genomes]
rs17161767	0.81[ASN][1000 genomes]
rs2365097	0.86[EUR][1000 genomes]
rs2365098	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28579189	0.86[EUR][1000 genomes]
rs60296241	0.89[ASN][1000 genomes]
rs6464149	0.86[EUR][1000 genomes]
rs6967652	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6970121	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73497923	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73497924	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73502717	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73502740	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73502747	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73502799	0.86[EUR][1000 genomes]
rs7787206	0.86[EUR][1000 genomes]
rs9655610	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140657200-140669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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