Variant report

Variant	rs73498073
Chromosome Location	chr11:62238228-62238229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62234470..62236185-chr11:62237827..62240057,2	MCF-7	breast:
2	chr11:62224472..62226054-chr11:62237157..62239843,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11231105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231140	1.00[AMR][1000 genomes]
rs12279778	1.00[AMR][1000 genomes]
rs12280776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287248	1.00[AMR][1000 genomes]
rs17157361	1.00[AMR][1000 genomes]
rs34709729	1.00[AMR][1000 genomes]
rs55774907	1.00[AMR][1000 genomes]
rs57293370	1.00[AMR][1000 genomes]
rs57575327	1.00[AMR][1000 genomes]
rs58479396	1.00[AMR][1000 genomes]
rs59314885	1.00[AMR][1000 genomes]
rs60928821	1.00[AMR][1000 genomes]
rs61524789	1.00[AMR][1000 genomes]
rs7118805	1.00[AMR][1000 genomes]
rs7126915	1.00[AMR][1000 genomes]
rs73502133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv1038606	chr11:62105613-62251969	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
4	nsv832180	chr11:62201605-62364828	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
5	nsv532284	chr11:62220043-62630253	Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1401 gene(s)	inside rSNPs	diseases
6	nsv345	chr11:62225251-62270254	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv897621	chr11:62230309-62290170	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62226400-62239000	Weak transcription	Fetal Stomach	stomach
2	chr11:62226600-62247000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:62228000-62239400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:62230000-62238400	Weak transcription	Colonic Mucosa	Colon
5	chr11:62230000-62239800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:62230200-62239600	Weak transcription	HSMM	muscle
7	chr11:62230400-62239600	Weak transcription	HSMMtube	muscle
8	chr11:62230800-62239200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:62231200-62238600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:62231200-62264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:62232600-62239600	Weak transcription	Adipose Nuclei	Adipose
12	chr11:62234400-62245600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:62235000-62239600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:62235200-62239600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:62235400-62238400	Enhancers	K562	blood
16	chr11:62235600-62239200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:62236600-62239800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:62236800-62238400	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:62237400-62238400	Weak transcription	Placenta	Placenta
20	chr11:62237400-62238400	Weak transcription	HepG2	liver
21	chr11:62237400-62239600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:62238000-62238400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:62238000-62238600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:62238000-62239600	Enhancers	A549	lung
25	chr11:62238000-62240800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr11:62238200-62239400	Enhancers	Hela-S3	cervix
27	chr11:62238200-62240200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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