Variant report

Variant	rs73500485
Chromosome Location	chr11:34172443-34172444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34157193..34160201-chr11:34169377..34172451,3	K562	blood:
2	chr11:34157193..34160201-chr11:34169377..34173390,4	K562	blood:
3	chr11:34098869..34100659-chr11:34172311..34174977,2	K562	blood:
4	chr11:34164734..34166251-chr11:34171246..34172937,2	K562	blood:
5	chr11:34171535..34173336-chr11:34174540..34176661,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73486524	1.00[AFR][1000 genomes]
rs73497067	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv820233	chr11:34171363-34174020	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv820477	chr11:34171916-34174282	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv825824	chr11:34172028-34173568	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv825825	chr11:34172028-34173952	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv825826	chr11:34172028-34174021	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv20629	chr11:34172092-34174187	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv825827	chr11:34172108-34173378	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv825828	chr11:34172108-34173952	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv825829	chr11:34172108-34173978	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv825830	chr11:34172108-34174067	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv825832	chr11:34172187-34173952	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv825833	chr11:34172187-34174076	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
3	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34129000-34177400	Strong transcription	Osteobl	bone
5	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
11	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
13	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:34129600-34178200	Strong transcription	Liver	Liver
15	chr11:34129800-34172800	Strong transcription	Ovary	ovary
16	chr11:34129800-34173200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:34129800-34173200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
19	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:34130000-34174600	Strong transcription	Dnd41	blood
23	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:34130000-34181800	Strong transcription	A549	lung
25	chr11:34130200-34172800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:34130200-34173200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:34130200-34177600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:34136200-34177200	Strong transcription	Adipose Nuclei	Adipose
29	chr11:34136200-34177200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:34138800-34185600	Strong transcription	Fetal Brain Female	brain
31	chr11:34143800-34173000	Strong transcription	Hela-S3	cervix
32	chr11:34146200-34187600	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:34148000-34176200	Strong transcription	Brain Hippocampus Middle	brain
34	chr11:34150400-34173800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:34150600-34175200	Strong transcription	Gastric	stomach
36	chr11:34150600-34178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:34150800-34174200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:34150800-34177200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:34151800-34175400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:34152000-34173000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:34152000-34173200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr11:34152000-34174000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:34152000-34174200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:34152000-34175000	Strong transcription	Esophagus	oesophagus
45	chr11:34152000-34175000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr11:34152200-34177600	Strong transcription	NHEK	skin
47	chr11:34152200-34184800	Strong transcription	Brain Germinal Matrix	brain
48	chr11:34152400-34186600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:34154600-34176800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:34155800-34177800	Strong transcription	Right Ventricle	heart

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