The 2.0 version of rSNPBase
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Variant report
Variant
rs73500880
Chromosome Location
chr11:34036954-34036955
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:34030524..34032316-chr11:34034939..34037311,2
K562
blood:
2
chr11:34035462..34037651-chr11:34072261..34075519,3
MCF-7
breast:
3
chr11:34034770..34037468-chr11:34039227..34043308,3
K562
blood:
4
chr11:34035968..34037772-chr11:34038826..34040727,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000135387
Chromatin interaction
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs16925030
1.00[EUR][1000 genomes]
rs16925044
0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925063
0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2473921
1.00[EUR][1000 genomes]
rs7121915
1.00[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links