Variant report

Variant	rs73501999
Chromosome Location	chr9:101747683-101747684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:
2	chr9:101743138..101745220-chr9:101746552..101748819,2	K562	blood:
3	chr9:101746159..101748228-chr9:101836720..101838665,2	K562	blood:
4	chr9:101746248..101748364-chr9:101750240..101752168,2	MCF-7	breast:
5	chr9:101747587..101749233-chr9:101899420..101901955,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73501997	1.00[EUR][1000 genomes]
rs73503709	1.00[EUR][1000 genomes]
rs73653699	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101760800	Weak transcription	Gastric	stomach
3	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
5	chr9:101740400-101756800	Weak transcription	Ovary	ovary
6	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
8	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:101741800-101748800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:101742800-101748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:101746000-101748200	Strong transcription	Stomach Smooth Muscle	stomach
14	chr9:101746400-101747800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:101746400-101747800	Weak transcription	Pancreas	Pancrea
16	chr9:101746400-101750600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:101746600-101747800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:101746600-101747800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:101746600-101747800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:101746600-101748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:101746600-101749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101746600-101749200	Weak transcription	Placenta	Placenta
23	chr9:101746600-101749200	Weak transcription	Right Ventricle	heart
24	chr9:101746600-101749400	Weak transcription	Lung	lung
25	chr9:101746800-101747800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:101746800-101747800	Weak transcription	Fetal Stomach	stomach
27	chr9:101746800-101747800	Weak transcription	Left Ventricle	heart
28	chr9:101746800-101749000	Weak transcription	HSMMtube	muscle
29	chr9:101746800-101749600	Weak transcription	NHLF	lung
30	chr9:101746800-101750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:101747000-101747800	Weak transcription	Adipose Nuclei	Adipose
33	chr9:101747000-101749200	Weak transcription	Right Atrium	heart
34	chr9:101747000-101749400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links