Variant report

Variant	rs73502435
Chromosome Location	chr7:140339561-140339562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140338343..140339883-chr7:140370267..140373253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73485799	1.00[AMR][1000 genomes]
rs73487622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140326600-140339600	Weak transcription	Esophagus	oesophagus
2	chr7:140336000-140339600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:140336200-140339600	Weak transcription	Pancreas	Pancrea
4	chr7:140337200-140339600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:140337200-140339600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:140337600-140339600	Flanking Active TSS	Fetal Lung	lung
7	chr7:140338200-140339600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:140338200-140339800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr7:140338600-140339600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
10	chr7:140338600-140339600	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr7:140338600-140339600	Weak transcription	Lung	lung
12	chr7:140339000-140339600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
13	chr7:140339000-140339600	Active TSS	Fetal Stomach	stomach
14	chr7:140339000-140339800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:140339000-140339800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr7:140339000-140340000	Flanking Active TSS	NH-A	brain
17	chr7:140339000-140340800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:140339000-140341400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:140339200-140339600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:140339200-140339600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr7:140339200-140339600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr7:140339200-140339600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr7:140339200-140339600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
24	chr7:140339200-140339600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr7:140339200-140339600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:140339200-140339600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
27	chr7:140339200-140339600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:140339200-140339600	Active TSS	Colon Smooth Muscle	Colon
29	chr7:140339200-140339600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
30	chr7:140339200-140339800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:140339200-140339800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr7:140339200-140339800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:140339200-140339800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:140339200-140339800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:140339200-140339800	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr7:140339200-140339800	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr7:140339200-140339800	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr7:140339200-140339800	Flanking Active TSS	Fetal Brain Male	brain
39	chr7:140339200-140339800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
40	chr7:140339200-140339800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
41	chr7:140339200-140339800	Bivalent/Poised TSS	Stomach Mucosa	stomach
42	chr7:140339200-140340000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:140339200-140340000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:140339200-140340000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:140339200-140340000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:140339200-140340000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:140339200-140340000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:140339200-140340000	Flanking Active TSS	Brain Cingulate Gyrus	brain
49	chr7:140339200-140340000	Flanking Active TSS	Fetal Brain Female	brain
50	chr7:140339200-140340000	Active TSS	Right Atrium	heart

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