Variant report

Variant	rs73502789
Chromosome Location	chr7:140622521-140622522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140621971..140623569-chr7:140707032..140709391,2	MCF-7	breast:
2	chr7:140621726..140624133-chr7:141216889..141219173,2	K562	blood:
3	chr7:140538628..140541120-chr7:140619977..140622636,2	K562	blood:
4	chr7:140621424..140625988-chr7:140712136..140716057,7	K562	blood:
5	chr7:140621424..140625828-chr7:140713150..140716057,6	K562	blood:
6	chr7:140620388..140623057-chr7:140623263..140624775,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000090263	Chromatin interaction
ENSG00000157764	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73494533	1.00[AMR][1000 genomes]
rs73494544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498913	1.00[AMR][1000 genomes]
rs73502787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140593800-140623200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:140597200-140623000	Weak transcription	Fetal Kidney	kidney
3	chr7:140600800-140622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:140604200-140623000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:140609200-140623200	Weak transcription	Fetal Stomach	stomach
6	chr7:140610800-140622600	Weak transcription	Right Atrium	heart
7	chr7:140610800-140623200	Weak transcription	Right Ventricle	heart
8	chr7:140612200-140623400	Weak transcription	Gastric	stomach
9	chr7:140613200-140623200	Weak transcription	Psoas Muscle	Psoas
10	chr7:140613600-140623400	Weak transcription	Pancreas	Pancrea
11	chr7:140614400-140623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:140616000-140623200	Weak transcription	Thymus	Thymus
13	chr7:140617400-140623200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:140617400-140623400	Weak transcription	Left Ventricle	heart
15	chr7:140617800-140622600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:140618000-140622600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:140618000-140622600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:140618400-140623200	Weak transcription	Fetal Intestine Small	intestine
19	chr7:140618400-140623200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:140618400-140623400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:140618400-140623400	Weak transcription	Esophagus	oesophagus
22	chr7:140618400-140623400	Weak transcription	Lung	lung
23	chr7:140618400-140623400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:140619800-140623400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:140619800-140623400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr7:140620200-140623200	Enhancers	Liver	Liver
27	chr7:140620200-140623200	Enhancers	Colon Smooth Muscle	Colon
28	chr7:140620200-140623400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:140620200-140625400	Active TSS	GM12878-XiMat	blood
30	chr7:140620400-140622800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:140620400-140623000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:140620400-140623400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:140620400-140623400	Weak transcription	Ovary	ovary
34	chr7:140620600-140622600	Enhancers	HepG2	liver
35	chr7:140620600-140622800	Weak transcription	HMEC	breast
36	chr7:140620800-140625200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr7:140621400-140623200	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr7:140621600-140622800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr7:140621600-140622800	Enhancers	A549	lung
40	chr7:140621600-140623400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:140621800-140622800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr7:140621800-140622800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr7:140621800-140623000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:140621800-140623000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr7:140621800-140623200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr7:140621800-140623200	Enhancers	Brain Substantia Nigra	brain
47	chr7:140621800-140623200	Enhancers	Fetal Lung	lung
48	chr7:140621800-140623400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:140622000-140622600	Enhancers	Primary B cells from cord blood	blood
50	chr7:140622000-140622600	Enhancers	Primary hematopoietic stem cells	blood

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