Variant report

Variant	rs73503690
Chromosome Location	chr11:76505796-76505797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76504803..76506935-chr11:76570633..76574402,3	MCF-7	breast:
2	chr11:76504410..76507803-chr11:76511412..76514048,3	MCF-7	breast:
3	chr11:76505701..76507573-chr11:76519620..76521657,2	MCF-7	breast:
4	chr11:76485960..76487804-chr11:76505414..76507277,2	K562	blood:
5	chr11:76499655..76502011-chr11:76503724..76505940,3	K562	blood:
6	chr11:76504952..76506827-chr11:76516420..76519216,2	MCF-7	breast:
7	chr11:76504723..76506635-chr11:76511764..76514522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11546727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496000-76506800	Weak transcription	Aorta	Aorta
2	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
3	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:76496800-76507400	Enhancers	Stomach Mucosa	stomach
5	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:76498400-76505800	Enhancers	Placenta	Placenta
7	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
8	chr11:76500000-76506400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76503000-76506200	Enhancers	Fetal Intestine Large	intestine
13	chr11:76503200-76506600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:76503400-76509400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:76503400-76510000	Weak transcription	K562	blood
16	chr11:76503600-76506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:76503800-76505800	Enhancers	Fetal Muscle Leg	muscle
18	chr11:76503800-76506000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:76503800-76506200	Transcr. at gene 5' and 3'	A549	lung
20	chr11:76504000-76505800	Enhancers	Fetal Brain Female	brain
21	chr11:76504000-76506000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:76504000-76506000	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:76504000-76506000	Enhancers	Lung	lung
24	chr11:76504000-76506800	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:76504000-76507400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76504200-76506200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:76504200-76506400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:76504200-76507600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:76504200-76510000	Genic enhancers	Esophagus	oesophagus
30	chr11:76504200-76510000	Genic enhancers	Fetal Intestine Small	intestine
31	chr11:76504200-76510200	Weak transcription	HSMMtube	muscle
32	chr11:76504400-76506000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:76504400-76506400	Enhancers	Adipose Nuclei	Adipose
34	chr11:76504400-76506600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:76504400-76508800	Genic enhancers	Liver	Liver
36	chr11:76504400-76509400	Weak transcription	Small Intestine	intestine
37	chr11:76504600-76506400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:76504600-76506800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:76504600-76506800	Weak transcription	Hela-S3	cervix
40	chr11:76504600-76509800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:76504600-76510000	Weak transcription	Brain Anterior Caudate	brain
42	chr11:76504600-76510000	Weak transcription	Dnd41	blood
43	chr11:76504600-76510000	Weak transcription	HUVEC	blood vessel
44	chr11:76504600-76510000	Weak transcription	NHDF-Ad	bronchial
45	chr11:76504800-76505800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:76504800-76506000	Enhancers	Spleen	Spleen
47	chr11:76504800-76506400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:76504800-76510000	Weak transcription	HSMM	muscle
49	chr11:76505000-76506400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:76505000-76506600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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