Variant report

Variant	rs73504590
Chromosome Location	chr11:75505950-75505951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75505538..75510533-chr11:75511527..75514992,5	MCF-7	breast:
2	chr11:75493435..75496040-chr11:75505908..75507945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254814	Chromatin interaction
ENSG00000062282	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11825799	0.84[AFR][1000 genomes]
rs61459412	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489942	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504563	0.85[AFR][1000 genomes]
rs73504565	0.95[AFR][1000 genomes]
rs73504569	0.95[AFR][1000 genomes]
rs73504572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504578	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504601	1.00[AMR][1000 genomes]
rs7929403	0.89[AFR][1000 genomes]
rs7933029	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75481000-75506600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:75489200-75508200	Weak transcription	GM12878-XiMat	blood
3	chr11:75495000-75511200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:75495400-75506400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:75495400-75512000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:75497600-75509400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:75497800-75508200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:75497800-75514200	Weak transcription	Gastric	stomach
11	chr11:75498000-75507600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:75498800-75506600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:75498800-75511600	Weak transcription	Stomach Mucosa	stomach
14	chr11:75499000-75512000	Weak transcription	Lung	lung
15	chr11:75499200-75506400	Strong transcription	Fetal Intestine Small	intestine
16	chr11:75499200-75507600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:75501400-75507000	Weak transcription	Spleen	Spleen
18	chr11:75501800-75513200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:75502400-75511200	Weak transcription	Esophagus	oesophagus
20	chr11:75502600-75506400	Weak transcription	NHEK	skin
21	chr11:75503400-75509800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:75503800-75507600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:75504200-75507200	Enhancers	Liver	Liver
24	chr11:75504400-75506200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:75504400-75506400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:75504400-75508400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:75504400-75512000	Weak transcription	Right Atrium	heart
28	chr11:75504600-75506200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:75504600-75506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:75504800-75506400	Weak transcription	Right Ventricle	heart
31	chr11:75504800-75506400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:75504800-75506400	Weak transcription	HMEC	breast
33	chr11:75504800-75506800	Weak transcription	Fetal Stomach	stomach
34	chr11:75504800-75510200	Weak transcription	Fetal Thymus	thymus
35	chr11:75505000-75512200	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:75505200-75506600	Weak transcription	Brain Anterior Caudate	brain
37	chr11:75505200-75506600	Weak transcription	Fetal Intestine Large	intestine
38	chr11:75505200-75506800	Enhancers	HepG2	liver
39	chr11:75505400-75506200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:75505400-75506400	Weak transcription	Adipose Nuclei	Adipose
41	chr11:75505400-75506400	Weak transcription	Pancreas	Pancrea
42	chr11:75505400-75506600	Weak transcription	Fetal Brain Female	brain
43	chr11:75505400-75506600	Weak transcription	Left Ventricle	heart
44	chr11:75505600-75509600	Weak transcription	Fetal Heart	heart
45	chr11:75505800-75506200	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links