Variant report

Variant	rs73505643
Chromosome Location	chr7:140370473-140370474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ADCK2	TF binding region
ENSG00000146966	Chromatin interaction
ENSG00000090266	Chromatin interaction
ENSG00000240889	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55815432	0.87[AMR][1000 genomes]
rs61201681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464932	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73736519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140365800-140372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:140367400-140371800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:140367600-140370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:140368000-140371800	Weak transcription	Fetal Kidney	kidney
5	chr7:140369200-140371600	Weak transcription	Ovary	ovary
6	chr7:140369600-140372000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:140370000-140370800	Enhancers	K562	blood
8	chr7:140370000-140371000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:140370000-140371800	Weak transcription	Placenta	Placenta
10	chr7:140370400-140370600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:140370400-140370600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:140370400-140370600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:140370400-140370800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:140370400-140371800	Weak transcription	Hela-S3	cervix
15	chr7:140370400-140372000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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