Variant report

Variant	rs73508238
Chromosome Location	chr11:83639458-83639459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58675039	1.00[AMR][1000 genomes]
rs61256660	1.00[AMR][1000 genomes]
rs73509808	1.00[AMR][1000 genomes]
rs73524932	1.00[AMR][1000 genomes]
rs73524960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83636200-83644200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:83636600-83642600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:83638800-83641400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:83639400-83641200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:83639400-83649600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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