Variant report

Variant	rs73508415
Chromosome Location	chr9:108673124-108673125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108672760..108675101-chr9:110098994..110101048,2	MCF-7	breast:
2	chr9:108669187..108678029-chr9:108711816..108723206,29	MCF-7	breast:
3	chr9:108672824..108675555-chr9:108676544..108678880,2	MCF-7	breast:
4	chr9:108671913..108676613-chr9:108714105..108718467,7	MCF-7	breast:
5	chr9:108643116..108645667-chr9:108673078..108675664,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73504012	1.00[EUR][1000 genomes]
rs73520076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108664800-108673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:108670800-108673600	Weak transcription	NHEK	skin
3	chr9:108670800-108673800	Weak transcription	HMEC	breast
4	chr9:108670800-108674000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:108672200-108674400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:108672200-108675400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:108672400-108673200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:108672400-108674600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:108672400-108674600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:108672400-108674600	Enhancers	Psoas Muscle	Psoas
11	chr9:108672400-108674800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:108672400-108675400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:108672400-108675400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:108672400-108676000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:108672600-108673200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:108672600-108673400	Enhancers	A549	lung
17	chr9:108672600-108673600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:108672600-108673800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:108672600-108675200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr9:108672600-108675400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:108672600-108675400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:108672600-108675600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr9:108672600-108677000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:108672800-108673200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:108672800-108673400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:108672800-108674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:108672800-108674400	Enhancers	HepG2	liver
28	chr9:108672800-108675200	Enhancers	Brain Anterior Caudate	brain
29	chr9:108673000-108673400	Weak transcription	Fetal Muscle Leg	muscle
30	chr9:108673000-108673600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:108673000-108674400	Enhancers	Fetal Heart	heart
32	chr9:108673000-108675400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:108673000-108677800	Enhancers	HUES64 Cell Line	embryonic stem cell

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