Variant report

Variant	rs735088
Chromosome Location	chr3:42409000-42409001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11713695	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13340160	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442272	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs247411	1.00[ASN][1000 genomes]
rs2907773	1.00[ASN][1000 genomes]
rs33506	1.00[ASN][1000 genomes]
rs33507	1.00[ASN][1000 genomes]
rs33508	1.00[ASN][1000 genomes]
rs33509	1.00[ASN][1000 genomes]
rs33512	1.00[ASN][1000 genomes]
rs33513	1.00[ASN][1000 genomes]
rs61083637	1.00[ASN][1000 genomes]
rs62248806	1.00[ASN][1000 genomes]
rs62248843	1.00[ASN][1000 genomes]
rs62248845	1.00[ASN][1000 genomes]
rs62257797	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065860	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7623466	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1009125	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv536549	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42407200-42409600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:42407200-42410200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:42407200-42411000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:42408000-42409400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:42408200-42411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:42408400-42410800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:42408600-42411600	Enhancers	Fetal Muscle Leg	muscle
8	chr3:42408800-42409400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:42408800-42411200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:42409000-42409200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:42409000-42409200	Enhancers	Fetal Brain Female	brain
12	chr3:42409000-42409200	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:42409000-42409200	Enhancers	Pancreas	Pancrea
14	chr3:42409000-42409200	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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