Variant report

Variant	rs73514487
Chromosome Location	chr9:94941482-94941483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94936933..94939194-chr9:94940087..94941834,2	MCF-7	breast:
2	chr9:94939916..94941677-chr9:94943459..94945410,2	K562	blood:
3	chr9:94934989..94939332-chr9:94939467..94943300,4	MCF-7	breast:
4	chr9:94940710..94942408-chr9:94945817..94947948,2	K562	blood:
5	chr9:94939871..94945930-chr9:94946587..94952427,7	K562	blood:
6	chr9:94921403..94923643-chr9:94939810..94941774,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs3847319	0.83[AMR][1000 genomes]
rs57050708	0.83[AMR][1000 genomes]
rs57363956	1.00[AMR][1000 genomes]
rs57829709	0.83[AMR][1000 genomes]
rs59519008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60752945	0.83[AMR][1000 genomes]
rs60945405	0.83[AMR][1000 genomes]
rs7024757	0.83[AMR][1000 genomes]
rs7027344	0.83[AMR][1000 genomes]
rs73514486	1.00[AMR][1000 genomes]
rs73514490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516509	0.83[AMR][1000 genomes]
rs73516514	0.83[AMR][1000 genomes]
rs73516525	0.83[AMR][1000 genomes]
rs73516542	0.83[AMR][1000 genomes]
rs73516549	0.83[AMR][1000 genomes]
rs73516561	0.83[AMR][1000 genomes]
rs73516563	0.83[AMR][1000 genomes]
rs73518479	0.83[AMR][1000 genomes]
rs9775523	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94937200-94943400	Weak transcription	Spleen	Spleen
2	chr9:94938000-94942600	Weak transcription	Placenta	Placenta
3	chr9:94938600-94943800	Weak transcription	Gastric	stomach
4	chr9:94939600-94943200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94939800-94942800	Weak transcription	Pancreas	Pancrea
6	chr9:94940400-94942600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:94941200-94941600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr9:94941400-94941600	Enhancers	HSMM	muscle
9	chr9:94941400-94944000	Enhancers	Fetal Muscle Leg	muscle
10	chr9:94941400-94944000	Enhancers	K562	blood
11	chr9:94941400-94944200	Enhancers	HSMMtube	muscle

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