Variant report

Variant	rs73515053
Chromosome Location	chr11:68165931-68165932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68159157..68161906-chr11:68164331..68167262,3	K562	blood:
2	chr11:68150498..68154117-chr11:68165017..68167539,3	MCF-7	breast:
3	chr11:68165701..68168619-chr11:68192290..68194513,2	K562	blood:
4	chr11:68155936..68158633-chr11:68163995..68166705,2	K562	blood:
5	chr11:68159157..68163122-chr11:68164124..68167262,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2509524	1.00[EUR][1000 genomes]
rs4930231	1.00[EUR][1000 genomes]
rs4930232	1.00[EUR][1000 genomes]
rs542995	1.00[EUR][1000 genomes]
rs569430	1.00[EUR][1000 genomes]
rs570947	1.00[EUR][1000 genomes]
rs588578	1.00[EUR][1000 genomes]
rs630456	1.00[EUR][1000 genomes]
rs7107592	1.00[EUR][1000 genomes]
rs73515048	1.00[EUR][1000 genomes]
rs73516804	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1039671	chr11:68120571-68206630	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv897861	chr11:68129606-68196830	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv469965	chr11:68140781-68217420	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68142600-68179000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:68147400-68181600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:68148600-68196800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:68149200-68174000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:68149400-68167000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:68149600-68180400	Weak transcription	NHLF	lung
7	chr11:68150200-68166800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:68151800-68166800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:68152200-68166000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:68156400-68166800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:68157000-68171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:68157200-68166800	Weak transcription	Fetal Kidney	kidney
13	chr11:68157200-68174000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:68157200-68196600	Weak transcription	NH-A	brain
15	chr11:68157400-68170800	Weak transcription	HMEC	breast
16	chr11:68157600-68167000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:68157600-68167000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:68157600-68171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:68157600-68180400	Weak transcription	Osteobl	bone
20	chr11:68157800-68166600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:68157800-68169600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:68157800-68169600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:68158000-68166800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:68158000-68170800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:68158000-68173600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:68158200-68166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:68158200-68169800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:68158600-68170800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:68159200-68177400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:68159400-68169000	Weak transcription	NHEK	skin
31	chr11:68159400-68171000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:68159600-68169600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:68159600-68170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:68160400-68166800	Weak transcription	Fetal Brain Female	brain
35	chr11:68160400-68167200	Weak transcription	Colonic Mucosa	Colon
36	chr11:68160400-68171000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:68160400-68171200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:68162000-68169800	Weak transcription	Hela-S3	cervix
39	chr11:68163200-68168800	Weak transcription	Dnd41	blood
40	chr11:68163400-68166000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:68163400-68166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:68163400-68167400	Enhancers	HSMM	muscle
43	chr11:68163400-68170000	Enhancers	Fetal Heart	heart
44	chr11:68163600-68166600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:68163600-68167200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:68163800-68167800	Enhancers	Ovary	ovary
47	chr11:68163800-68169200	Genic enhancers	Fetal Stomach	stomach
48	chr11:68163800-68169600	Weak transcription	Primary T cells from cord blood	blood
49	chr11:68164000-68166200	Enhancers	HSMMtube	muscle
50	chr11:68164000-68166600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links