Variant report

Variant	rs73515395
Chromosome Location	chr6:118226460-118226461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1476048	1.00[EUR][1000 genomes]
rs474078	1.00[EUR][1000 genomes]
rs478718	1.00[EUR][1000 genomes]
rs4946289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs520888	1.00[EUR][1000 genomes]
rs526420	1.00[EUR][1000 genomes]
rs57565106	1.00[EUR][1000 genomes]
rs73515366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs797779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481732	0.82[AFR][1000 genomes]
rs9688556	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118223800-118226600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118226400-118227600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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