Variant report

Variant	rs73515401
Chromosome Location	chr6:118230594-118230595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73517506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv522455	chr6:118228527-118240685	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118228000-118230600	Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr6:118228000-118230800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:118228200-118230800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118229600-118231800	Weak transcription	Aorta	Aorta
5	chr6:118229800-118241400	Weak transcription	Gastric	stomach
6	chr6:118230000-118231000	Active TSS	Fetal Brain Female	brain
7	chr6:118230200-118230600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:118230400-118230800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:118230400-118230800	Active TSS	Brain Germinal Matrix	brain
10	chr6:118230400-118231800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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