Variant report

Variant	rs73516440
Chromosome Location	chr6:117902782-117902783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117901081..117902881-chr6:117915482..117917190,2	K562	blood:
2	chr6:117901608..117904180-chr6:117924058..117926949,2	K562	blood:
3	chr6:117893704..117895776-chr6:117900374..117902914,2	K562	blood:
4	chr6:117893704..117896609-chr6:117901239..117902914,2	K562	blood:
5	chr6:117901081..117903623-chr6:117915436..117916982,2	K562	blood:

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56784049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57638292	1.00[AMR][1000 genomes]
rs73511210	1.00[AMR][1000 genomes]
rs73512286	1.00[AMR][1000 genomes]
rs73516427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524740	1.00[AFR][1000 genomes]
rs73524743	1.00[AFR][1000 genomes]
rs73524776	1.00[AMR][1000 genomes]
rs73528113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117869800-117903800	Weak transcription	Spleen	Spleen
2	chr6:117869800-117904000	Weak transcription	Gastric	stomach
3	chr6:117869800-117904000	Weak transcription	Pancreas	Pancrea
4	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
5	chr6:117872200-117905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
8	chr6:117877000-117903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:117880800-117903600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:117880800-117903600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:117880800-117904000	Weak transcription	Aorta	Aorta
12	chr6:117880800-117904000	Weak transcription	Esophagus	oesophagus
13	chr6:117882600-117916400	Weak transcription	Small Intestine	intestine
14	chr6:117883000-117902800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:117884600-117904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:117884600-117916200	Weak transcription	Fetal Brain Male	brain
17	chr6:117886600-117903600	Weak transcription	Brain Germinal Matrix	brain
18	chr6:117887600-117922200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:117887800-117906800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:117889800-117905600	Weak transcription	Ovary	ovary
21	chr6:117890600-117912600	Weak transcription	Fetal Heart	heart
22	chr6:117890600-117918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:117890800-117910000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:117890800-117914000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:117890800-117918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:117890800-117919800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:117890800-117919800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:117890800-117920600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:117891000-117903600	Weak transcription	Thymus	Thymus
30	chr6:117891000-117906800	Weak transcription	Psoas Muscle	Psoas
31	chr6:117891000-117910000	Weak transcription	NHEK	skin
32	chr6:117891000-117911200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:117891000-117920600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:117892200-117903600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:117892200-117918400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:117892200-117921400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:117892400-117910000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:117892400-117920800	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:117894200-117919000	Weak transcription	Fetal Kidney	kidney
40	chr6:117894600-117910200	Weak transcription	HUVEC	blood vessel
41	chr6:117894800-117903600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:117894800-117903600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:117894800-117904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:117894800-117909800	Weak transcription	Left Ventricle	heart
45	chr6:117894800-117910800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:117894800-117920600	Weak transcription	HSMMtube	muscle
47	chr6:117894800-117921000	Weak transcription	Right Ventricle	heart
48	chr6:117894800-117922400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:117895200-117910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:117895400-117903200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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