Variant report

Variant	rs73516871
Chromosome Location	chr11:68255541-68255542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68253599..68255875-chr11:68262603..68264609,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35146965	1.00[AFR][1000 genomes]
rs59985115	1.00[AFR][1000 genomes]
rs61063428	0.83[AFR][1000 genomes]
rs73504499	0.83[AFR][1000 genomes]
rs73516824	0.83[AFR][1000 genomes]
rs73516827	0.83[AFR][1000 genomes]
rs73516857	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68238200-68264800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:68238600-68287800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:68240000-68269800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:68240400-68262200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:68240400-68262200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:68240800-68262200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:68241200-68259400	Weak transcription	Thymus	Thymus
8	chr11:68241200-68264800	Weak transcription	K562	blood
9	chr11:68242000-68266000	Weak transcription	Hela-S3	cervix
10	chr11:68244000-68255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:68244400-68255600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:68244600-68255800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:68245000-68256200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:68245000-68264800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:68246800-68266600	Weak transcription	Fetal Thymus	thymus
16	chr11:68247000-68270800	Weak transcription	Dnd41	blood
17	chr11:68247400-68256000	Weak transcription	Aorta	Aorta
18	chr11:68247400-68257200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:68247400-68264800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:68248800-68266000	Weak transcription	HSMM	muscle
21	chr11:68249000-68255600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:68249000-68256600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:68249000-68258200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:68249000-68265400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:68249000-68270000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:68249200-68255600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:68249200-68256200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:68249200-68258000	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:68249200-68262400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:68249400-68256000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:68249400-68256000	Weak transcription	Colonic Mucosa	Colon
32	chr11:68249400-68256000	Weak transcription	Spleen	Spleen
33	chr11:68249400-68258600	Weak transcription	Small Intestine	intestine
34	chr11:68249400-68263400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:68249400-68270800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:68249600-68255800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:68249600-68255800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:68249600-68255800	Weak transcription	Psoas Muscle	Psoas
39	chr11:68249600-68255800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:68249600-68256000	Weak transcription	Gastric	stomach
41	chr11:68249600-68256000	Weak transcription	HMEC	breast
42	chr11:68249600-68257600	Weak transcription	Stomach Mucosa	stomach
43	chr11:68249600-68259800	Weak transcription	Right Ventricle	heart
44	chr11:68249600-68262000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:68249600-68262800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:68249600-68265200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:68249600-68265800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:68250200-68256200	Weak transcription	Adipose Nuclei	Adipose
49	chr11:68251000-68262400	Weak transcription	HepG2	liver
50	chr11:68251400-68255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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