Variant report

Variant	rs73519491
Chromosome Location	chr9:96727129-96727130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28785792	1.00[AMR][1000 genomes]
rs58501549	1.00[AMR][1000 genomes]
rs73517176	0.81[AFR][1000 genomes]
rs73518262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518294	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
2	chr9:96723000-96729800	Weak transcription	Gastric	stomach
3	chr9:96725000-96727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
5	chr9:96726600-96730400	Strong transcription	Fetal Stomach	stomach
6	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
7	chr9:96727000-96727200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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