Variant report

Variant	rs73519594
Chromosome Location	chr6:118308796-118308797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57637403	1.00[AFR][1000 genomes]
rs60966687	1.00[AMR][1000 genomes]
rs73517528	1.00[AFR][1000 genomes]
rs73517530	1.00[AFR][1000 genomes]
rs73517542	1.00[AFR][1000 genomes]
rs73519588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118305600-118315400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118306600-118310000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:118307400-118309800	Weak transcription	Brain Substantia Nigra	brain
4	chr6:118307400-118310000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:118307600-118310000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:118307800-118309200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:118308000-118310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:118308200-118310400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:118308200-118311400	Weak transcription	Brain Angular Gyrus	brain
10	chr6:118308400-118310200	Weak transcription	Brain Germinal Matrix	brain
11	chr6:118308400-118314200	Weak transcription	Fetal Brain Female	brain
12	chr6:118308600-118311400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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