Variant report

Variant	rs73520072
Chromosome Location	chr9:108514564-108514565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs41297177	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982456	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056859	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59050784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59598160	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026243	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026348	1.00[EUR][1000 genomes]
rs7027559	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73522009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522042	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867014	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108498400-108520000	Weak transcription	Fetal Heart	heart
2	chr9:108498400-108520400	Weak transcription	Psoas Muscle	Psoas
3	chr9:108498800-108514600	Weak transcription	Small Intestine	intestine
4	chr9:108499200-108515000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:108499400-108514800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:108499400-108516000	Weak transcription	Brain Anterior Caudate	brain
7	chr9:108499400-108516000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:108499800-108514800	Weak transcription	Fetal Kidney	kidney
9	chr9:108502200-108514800	Weak transcription	Fetal Brain Male	brain
10	chr9:108506200-108515000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:108509200-108515800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:108510000-108514600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr9:108510000-108515800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:108510000-108517000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr9:108510200-108515000	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:108510200-108517000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:108510400-108515400	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:108510400-108515800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr9:108510400-108516400	Weak transcription	HMEC	breast
20	chr9:108510600-108515200	Strong transcription	Ovary	ovary
21	chr9:108510800-108515200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr9:108511000-108515400	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:108511200-108515000	Strong transcription	Primary T cells from cord blood	blood
24	chr9:108511600-108516400	Weak transcription	Hela-S3	cervix
25	chr9:108511800-108515200	Strong transcription	K562	blood
26	chr9:108511800-108515800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:108511800-108516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:108512000-108516000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:108512000-108516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:108512200-108514600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:108512400-108516200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:108512600-108515200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:108513000-108514800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:108513200-108514800	ZNF genes & repeats	Fetal Brain Female	brain
35	chr9:108513200-108514800	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr9:108513200-108515200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr9:108513200-108515200	ZNF genes & repeats	Dnd41	blood
38	chr9:108513200-108515400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:108513200-108515400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:108513200-108515600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:108513400-108514600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:108513400-108514600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:108513400-108514600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:108513400-108514600	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:108513400-108514800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:108513400-108514800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:108513400-108514800	ZNF genes & repeats	Fetal Stomach	stomach
48	chr9:108513400-108514800	ZNF genes & repeats	Lung	lung
49	chr9:108513400-108514800	ZNF genes & repeats	Pancreas	Pancrea
50	chr9:108513400-108514800	ZNF genes & repeats	Thymus	Thymus

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