Variant report

Variant	rs73520239
Chromosome Location	chr6:119463437-119463438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119460972..119463917-chr6:119467020..119470933,5	K562	blood:
2	chr6:119456618..119458872-chr6:119461770..119464134,2	K562	blood:
3	chr6:119462335..119464638-chr6:119668936..119670959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17080788	1.00[AMR][1000 genomes]
rs17080790	1.00[AMR][1000 genomes]
rs17080796	1.00[AMR][1000 genomes]
rs17080802	1.00[AMR][1000 genomes]
rs17080815	1.00[AMR][1000 genomes]
rs17080830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:119457000-119474800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:119459000-119469000	Weak transcription	Lung	lung
5	chr6:119459200-119468000	Weak transcription	Placenta	Placenta
6	chr6:119459400-119467800	Weak transcription	NHLF	lung
7	chr6:119460400-119466200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:119460600-119466000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:119460800-119467600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:119461200-119466000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:119461200-119466000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:119461200-119466200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:119461200-119466200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:119461200-119466400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:119461400-119465800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:119461400-119466400	Weak transcription	GM12878-XiMat	blood
17	chr6:119461600-119466000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:119461600-119467800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:119461800-119464000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:119461800-119468600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:119462000-119466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:119462000-119466200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:119462400-119464200	Weak transcription	HepG2	liver
24	chr6:119462400-119466000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:119462600-119467800	Weak transcription	Fetal Heart	heart
26	chr6:119462600-119468000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:119462800-119467800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:119463200-119464000	Enhancers	K562	blood
29	chr6:119463200-119464200	Enhancers	NHDF-Ad	bronchial
30	chr6:119463400-119464000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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