Variant report

Variant	rs73520569
Chromosome Location	chr6:91989847-91989848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17605336	1.00[EUR][1000 genomes]
rs17667431	1.00[EUR][1000 genomes]
rs59941830	1.00[EUR][1000 genomes]
rs73520536	1.00[EUR][1000 genomes]
rs73520587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73520596	1.00[EUR][1000 genomes]
rs73520597	1.00[EUR][1000 genomes]
rs73520598	1.00[EUR][1000 genomes]
rs73520600	1.00[EUR][1000 genomes]
rs73522303	1.00[EUR][1000 genomes]
rs73522307	1.00[EUR][1000 genomes]
rs9444837	1.00[EUR][1000 genomes]
rs9444853	1.00[EUR][1000 genomes]
rs9451645	1.00[EUR][1000 genomes]
rs9451648	1.00[EUR][1000 genomes]
rs9451650	1.00[EUR][1000 genomes]
rs9451651	1.00[EUR][1000 genomes]
rs9451652	1.00[EUR][1000 genomes]
rs9451653	1.00[EUR][1000 genomes]
rs9451655	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	esv2422475	chr6:91818508-91998748	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1030361	chr6:91980874-92116809	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv604131	chr6:91985742-92104678	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1025794	chr6:91985742-92116809	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1020313	chr6:91985742-92130149	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv830727	chr6:91988380-92155581	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91988400-91990000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr6:91988400-91990400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:91988400-91990600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:91988400-91990800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:91988400-91990800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:91988400-91991000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:91988400-91991400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:91988600-91990400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:91988600-91990600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:91988800-91990000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:91988800-91991400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:91989000-91990600	Enhancers	Brain Germinal Matrix	brain
13	chr6:91989200-91990600	Enhancers	Fetal Brain Female	brain
14	chr6:91989400-91990200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:91989600-91990800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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