Variant report

Variant	rs73520807
Chromosome Location	chr6:106968205-106968206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106955204..106959628-chr6:106966256..106969365,4	K562	blood:
2	chr6:106915579..106917784-chr6:106966286..106969138,2	K562	blood:
3	chr6:106967096..106969158-chr6:106977366..106978928,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs58618793	1.00[AFR][1000 genomes]
rs59212328	1.00[AFR][1000 genomes]
rs59524987	1.00[AFR][1000 genomes]
rs59632659	1.00[AFR][1000 genomes]
rs73508206	1.00[AFR][1000 genomes]
rs73508221	1.00[AFR][1000 genomes]
rs73508227	1.00[AFR][1000 genomes]
rs73508247	1.00[AFR][1000 genomes]
rs73508257	1.00[AFR][1000 genomes]
rs73508267	1.00[AFR][1000 genomes]
rs73520804	1.00[AFR][1000 genomes]
rs73520811	1.00[AFR][1000 genomes]
rs73520820	1.00[AFR][1000 genomes]
rs73520822	1.00[AFR][1000 genomes]
rs73520823	1.00[AFR][1000 genomes]
rs73520826	1.00[AFR][1000 genomes]
rs73520827	1.00[AFR][1000 genomes]
rs73520831	1.00[AFR][1000 genomes]
rs73520834	1.00[AFR][1000 genomes]
rs73520844	1.00[AFR][1000 genomes]
rs73522994	1.00[AFR][1000 genomes]
rs73522998	1.00[AFR][1000 genomes]
rs73524951	1.00[AFR][1000 genomes]
rs73524952	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106961000-106981000	Weak transcription	Lung	lung
2	chr6:106961000-107001400	Weak transcription	Gastric	stomach
3	chr6:106961200-106968600	Weak transcription	Pancreas	Pancrea
4	chr6:106962000-106972800	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:106963400-106968600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:106963400-106972800	Weak transcription	HUVEC	blood vessel
7	chr6:106964600-106972600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:106964800-106973000	Weak transcription	Stomach Mucosa	stomach
9	chr6:106964800-106991000	Weak transcription	Spleen	Spleen
10	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
11	chr6:106965400-106968800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr6:106965400-106970200	Flanking Active TSS	Dnd41	blood
13	chr6:106966400-106968600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:106966400-106972000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:106966800-106968600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:106966800-106968600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:106966800-106971200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:106967000-106968400	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr6:106967000-106968400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:106967000-106968400	Enhancers	Adipose Nuclei	Adipose
21	chr6:106967000-106968600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:106967000-106968800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr6:106967000-106968800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:106967000-106968800	Strong transcription	Liver	Liver
25	chr6:106967000-106969200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:106967000-106969200	Strong transcription	Fetal Intestine Large	intestine
27	chr6:106967000-106969400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr6:106967000-106969400	Strong transcription	HepG2	liver
29	chr6:106967000-106969400	Enhancers	K562	blood
30	chr6:106967200-106968600	Flanking Active TSS	Thymus	Thymus
31	chr6:106967200-106968800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:106967200-106969400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:106967200-106970000	Flanking Active TSS	Fetal Thymus	thymus
34	chr6:106967200-106970600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
35	chr6:106967400-106968400	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:106967400-106969200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:106967400-106969200	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
38	chr6:106967400-106969400	Active TSS	Rectal Smooth Muscle	rectum
39	chr6:106967600-106968400	Enhancers	NHLF	lung
40	chr6:106967600-106968600	Enhancers	HMEC	breast
41	chr6:106967600-106968600	Enhancers	NH-A	brain
42	chr6:106967600-106968800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
43	chr6:106967600-106969000	Genic enhancers	NHEK	skin
44	chr6:106967600-106970600	Strong transcription	Fetal Intestine Small	intestine
45	chr6:106967600-106971800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:106967800-106968400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:106967800-106968400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:106967800-106968400	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:106967800-106968400	Enhancers	Osteobl	bone
50	chr6:106967800-106968600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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