Variant report

Variant	rs73521723
Chromosome Location	chr9:110159509-110159510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11573664	1.00[AMR][1000 genomes]
rs11573708	1.00[AMR][1000 genomes]
rs16912438	1.00[AMR][1000 genomes]
rs59826759	1.00[AMR][1000 genomes]
rs61013376	1.00[AMR][1000 genomes]
rs73521715	1.00[AMR][1000 genomes]
rs73521719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893699	chr9:110107862-110188197	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110153200-110161000	Weak transcription	Gastric	stomach
2	chr9:110158600-110159600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110159000-110160600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:110159000-110160600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:110159200-110160400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:110159200-110160400	Enhancers	Fetal Lung	lung
7	chr9:110159200-110160400	Enhancers	NHEK	skin
8	chr9:110159200-110160600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:110159400-110159600	Enhancers	Esophagus	oesophagus
10	chr9:110159400-110159800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:110159400-110159800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:110159400-110159800	Enhancers	Fetal Brain Male	brain
13	chr9:110159400-110160400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:110159400-110160400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:110159400-110160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:110159400-110160600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:110159400-110160600	Enhancers	NHDF-Ad	bronchial
18	chr9:110159400-110160600	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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