Variant report

Variant	rs73522929
Chromosome Location	chr9:94741570-94741571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94520495..94521314-chr9:94740802..94741704,2	MCF-7	breast:
2	chr9:94716980..94717513-chr9:94740740..94741623,2	MCF-7	breast:
3	chr9:94716733..94717616-chr9:94740737..94741745,6	MCF-7	breast:
4	chr9:94537476..94538495-chr9:94740912..94741776,4	MCF-7	breast:
5	chr9:94537430..94538352-chr9:94740800..94741579,2	K562	blood:
6	chr9:94537450..94538332-chr9:94740729..94741592,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10115262	0.81[EUR][1000 genomes]
rs10115565	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10116088	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10117143	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10117394	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10118409	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118847	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10119603	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10119983	0.92[EUR][1000 genomes]
rs10121430	0.92[EUR][1000 genomes]
rs10121694	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10121928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122415	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10122798	0.92[EUR][1000 genomes]
rs10124705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992175	0.81[EUR][1000 genomes]
rs10992194	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992202	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992223	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12336291	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12336497	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12336689	0.83[AFR][1000 genomes]
rs12338124	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12341602	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12341791	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12343645	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12343647	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12344414	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12344469	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12347966	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12348496	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12349001	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12349327	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12352341	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12353321	0.84[EUR][1000 genomes]
rs16908113	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16908131	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28391324	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28429191	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28437390	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28477960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504279	0.92[EUR][1000 genomes]
rs28513744	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28552704	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28637477	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28735483	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28744634	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28759240	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28819206	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28825409	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4344138	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4498616	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4560856	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4604504	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56204501	0.85[AFR][1000 genomes]
rs56266486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57496363	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57862149	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58224960	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58679317	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59790820	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs60230478	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60743157	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61000917	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61246786	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61456615	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61596207	0.92[EUR][1000 genomes]
rs7018595	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7018827	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7021408	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7024215	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7025703	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7027147	0.81[EUR][1000 genomes]
rs7033888	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035964	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7043019	0.81[EUR][1000 genomes]
rs7045602	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046206	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7047389	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73512339	0.84[EUR][1000 genomes]
rs73512378	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73520889	0.81[EUR][1000 genomes]
rs73522907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73527330	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73653014	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7848959	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7851412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856148	0.81[EUR][1000 genomes]
rs7863425	0.81[EUR][1000 genomes]
rs7867659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870339	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7870565	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7871565	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7871997	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9696251	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94734800-94742200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:94740600-94742000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:94740600-94742000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:94740600-94742400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:94740800-94741600	Enhancers	Placenta	Placenta
6	chr9:94740800-94741600	Enhancers	NH-A	brain
7	chr9:94740800-94741800	Enhancers	Osteobl	bone
8	chr9:94740800-94742400	Enhancers	HSMM	muscle
9	chr9:94741000-94741600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:94741000-94741600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:94741000-94741800	Enhancers	NHLF	lung
12	chr9:94741000-94742000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:94741000-94742000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:94741000-94742200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:94741200-94741600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:94741200-94741600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:94741200-94741600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:94741200-94741600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:94741200-94741600	Enhancers	Stomach Smooth Muscle	stomach
20	chr9:94741200-94741600	Flanking Active TSS	A549	lung
21	chr9:94741200-94741600	Enhancers	HMEC	breast
22	chr9:94741200-94741600	Enhancers	NHDF-Ad	bronchial
23	chr9:94741200-94742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:94741400-94741600	Flanking Active TSS	K562	blood
25	chr9:94741400-94741800	Enhancers	NHEK	skin

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