Variant report

Variant	rs73523083
Chromosome Location	chr6:110095946-110095947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7770646	0.82[AFR][1000 genomes]
rs927128	0.83[AFR][1000 genomes]
rs927129	0.83[AFR][1000 genomes]
rs9480994	0.85[AFR][1000 genomes]
rs9481000	0.91[AFR][1000 genomes]
rs9487197	0.91[AFR][1000 genomes]
rs9487198	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv5436	chr6:110052812-110097662	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
3	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:110065800-110107400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:110065800-110107400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:110078800-110107400	Weak transcription	Fetal Brain Male	brain
10	chr6:110081200-110109600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:110084200-110115400	Weak transcription	Small Intestine	intestine
15	chr6:110085600-110112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:110086400-110104600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:110088400-110107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:110089000-110107600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:110089400-110111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:110089600-110108000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:110089600-110111400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:110089600-110115600	Weak transcription	Esophagus	oesophagus
23	chr6:110089600-110115600	Weak transcription	Gastric	stomach
24	chr6:110089800-110096600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:110089800-110107200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:110089800-110107400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:110089800-110115200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:110090000-110098000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:110090000-110098200	Weak transcription	Placenta	Placenta
30	chr6:110090000-110098400	Weak transcription	Aorta	Aorta
31	chr6:110090000-110100400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:110090000-110102000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:110090000-110102600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:110090000-110107200	Weak transcription	Brain Germinal Matrix	brain
35	chr6:110090000-110107200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:110090000-110107400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:110090000-110108800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:110090000-110112400	Weak transcription	Fetal Stomach	stomach
39	chr6:110090000-110113600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:110090000-110114400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:110090000-110115400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:110090000-110115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:110090000-110121000	Weak transcription	Ovary	ovary
44	chr6:110090200-110097200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:110090200-110098800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:110090200-110100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:110090200-110106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:110090200-110106800	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:110090200-110107400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:110090200-110107600	Weak transcription	Primary T cells fromperipheralblood	blood

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