Variant report

Variant	rs73524654
Chromosome Location	chr9:97805387-97805388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97680454..97683100-chr9:97804978..97806982,2	MCF-7	breast:
2	chr9:97799418..97802536-chr9:97804091..97807017,3	MCF-7	breast:
3	chr9:97804859..97806414-chr9:97808670..97810361,2	MCF-7	breast:
4	chr9:97803206..97809214-chr9:97809347..97813672,8	MCF-7	breast:
5	chr9:97804181..97807973-chr9:97809683..97813710,4	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4647545	0.90[AFR][1000 genomes]
rs60553517	1.00[AMR][1000 genomes]
rs60856972	1.00[AMR][1000 genomes]
rs73526528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536042	1.00[AMR][1000 genomes]
rs73536067	1.00[AMR][1000 genomes]
rs73536074	1.00[AMR][1000 genomes]
rs73538140	1.00[AMR][1000 genomes]
rs73538152	1.00[AMR][1000 genomes]
rs73540059	1.00[AMR][1000 genomes]
rs73540062	1.00[AMR][1000 genomes]
rs73540077	1.00[AMR][1000 genomes]
rs73540089	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
2	chr9:97789000-97806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:97793400-97810400	Weak transcription	HUVEC	blood vessel
4	chr9:97794200-97805800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:97794200-97807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:97794400-97806000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:97795000-97810400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:97795400-97806200	Genic enhancers	A549	lung
9	chr9:97795600-97806000	Weak transcription	Lung	lung
10	chr9:97795600-97808600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:97797000-97807800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:97798200-97808600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:97799400-97807600	Weak transcription	Thymus	Thymus
14	chr9:97799400-97810000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:97799800-97805400	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:97799800-97806800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:97800000-97808600	Genic enhancers	Liver	Liver
18	chr9:97800200-97806200	Strong transcription	Osteobl	bone
19	chr9:97800400-97806000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:97800400-97806000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:97800600-97805600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:97800600-97806000	Weak transcription	Adipose Nuclei	Adipose
23	chr9:97801200-97805400	Enhancers	Brain Substantia Nigra	brain
24	chr9:97801200-97806200	Weak transcription	NHDF-Ad	bronchial
25	chr9:97801400-97806200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:97801400-97807000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:97801600-97810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:97801800-97806800	Weak transcription	HMEC	breast
29	chr9:97801800-97807000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:97802200-97807600	Strong transcription	HSMM	muscle
31	chr9:97802400-97807200	Strong transcription	HSMMtube	muscle
32	chr9:97803000-97806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:97803000-97806600	Weak transcription	Spleen	Spleen
34	chr9:97803000-97810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:97803200-97806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:97803200-97806000	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:97803200-97806200	Weak transcription	Placenta	Placenta
38	chr9:97803200-97806200	Weak transcription	Gastric	stomach
39	chr9:97803200-97806600	Weak transcription	Esophagus	oesophagus
40	chr9:97803400-97805800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:97803400-97806200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:97803400-97807600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:97803600-97806000	Weak transcription	NHEK	skin
44	chr9:97803600-97806600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:97803800-97806600	Weak transcription	Stomach Mucosa	stomach
46	chr9:97804000-97807200	Enhancers	Pancreas	Pancrea
47	chr9:97804000-97808800	Weak transcription	Fetal Kidney	kidney
48	chr9:97804000-97810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:97804200-97806000	Weak transcription	Colon Smooth Muscle	Colon
50	chr9:97804200-97806000	Weak transcription	Fetal Lung	lung

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