Variant report

Variant	rs73524901
Chromosome Location	chr11:87224226-87224227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4539347	1.00[AMR][1000 genomes]
rs56702049	1.00[AMR][1000 genomes]
rs58787260	1.00[AMR][1000 genomes]
rs73526916	1.00[AMR][1000 genomes]
rs73526920	1.00[AMR][1000 genomes]
rs73526932	1.00[AMR][1000 genomes]
rs73526938	1.00[AMR][1000 genomes]
rs73526946	1.00[AMR][1000 genomes]
rs73526965	1.00[AMR][1000 genomes]
rs73526976	1.00[AMR][1000 genomes]
rs73529150	1.00[AMR][1000 genomes]
rs73529154	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041197	chr11:87185278-87227163	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv423	chr11:87207723-87252615	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87223600-87224400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr11:87223600-87224400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:87223600-87224600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:87223800-87224400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr11:87223800-87224400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:87223800-87224600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:87223800-87224600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:87223800-87224600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:87223800-87224800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:87223800-87224800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:87223800-87225000	Enhancers	Brain Germinal Matrix	brain
12	chr11:87224000-87224400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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