Variant report

Variant	rs7352529
Chromosome Location	chr20:52497783-52497784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:58602361..58603874-chr20:52495407..52498076,2	MCF-7	breast:
2	chr20:52495294..52498246-chr20:52538493..52540957,2	K562	blood:
3	chr17:56707653..56710748-chr20:52496770..52499747,3	MCF-7	breast:
4	chr20:46567885..46570835-chr20:52496630..52499608,2	MCF-7	breast:
5	chr20:52367488..52369229-chr20:52496755..52499743,2	K562	blood:
6	chr17:56735442..56738374-chr20:52495667..52498183,2	MCF-7	breast:
7	chr20:46552580..46554597-chr20:52497146..52499647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000062725	Chromatin interaction
ENSG00000259349	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11086444	0.86[EUR][1000 genomes]
rs11697016	0.86[EUR][1000 genomes]
rs11699573	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11906676	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1859902	0.86[EUR][1000 genomes]
rs35507231	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6064013	0.87[EUR][1000 genomes]
rs6064016	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6068699	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6068702	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv834008	chr20:52368660-52533410	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	185 gene(s)	inside rSNPs	diseases
3	nsv834009	chr20:52386050-52590795	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	182 gene(s)	inside rSNPs	diseases
4	nsv1060372	chr20:52409008-52502100	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	122 gene(s)	inside rSNPs	diseases
5	esv1831516	chr20:52437245-52514913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	98 gene(s)	inside rSNPs	diseases
6	nsv586222	chr20:52473679-52506380	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	74 gene(s)	inside rSNPs	diseases
7	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52490200-52499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:52490200-52501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:52490200-52502400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr20:52490600-52497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:52492600-52501200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr20:52494200-52500800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr20:52494200-52501000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr20:52494400-52507400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:52495600-52500000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr20:52495800-52499400	Weak transcription	HSMM	muscle
11	chr20:52495800-52499600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr20:52495800-52501200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr20:52496000-52497800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr20:52496000-52498000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr20:52496000-52498400	Enhancers	HepG2	liver
16	chr20:52496000-52499400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr20:52496000-52499800	Weak transcription	NHLF	lung
18	chr20:52496000-52501000	Weak transcription	HUVEC	blood vessel
19	chr20:52496000-52507000	Weak transcription	Small Intestine	intestine
20	chr20:52496800-52498000	Weak transcription	Spleen	Spleen
21	chr20:52496800-52499600	Weak transcription	NHDF-Ad	bronchial
22	chr20:52496800-52500000	Weak transcription	A549	lung
23	chr20:52496800-52500200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr20:52496800-52501000	Weak transcription	Fetal Thymus	thymus
25	chr20:52496800-52503600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr20:52497000-52498000	Weak transcription	K562	blood
27	chr20:52497000-52499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr20:52497000-52500800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr20:52497000-52501200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr20:52497200-52498600	Weak transcription	GM12878-XiMat	blood

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