Variant report

Variant	rs73526158
Chromosome Location	chr8:9045619-9045620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:9045384-9045792	MCF10A-Er-Src	breast:	n/a	n/a
2	JUND	chr8:9045494-9045822	HepG2	liver:	n/a	chr8:9045669-9045680
3	FOSL1	chr8:9045342-9045922	HCT-116	colon:	n/a	n/a
4	E2F4	chr8:9045557-9045732	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr8:9045546-9045873	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr8:9045331-9046018	A549	lung:	n/a	n/a
7	JUND	chr8:9045378-9045945	HCT-116	colon:	n/a	chr8:9045669-9045680
8	FOSL2	chr8:9045427-9045778	MCF-7	breast:	n/a	n/a
9	CEBPB	chr8:9044831-9045896	A549	lung:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
10	POLR2A	chr8:9045413-9045871	HCT-116	colon:	n/a	n/a
11	STAT3	chr8:9045437-9045894	MCF10A-Er-Src	breast:	n/a	n/a
12	TEAD4	chr8:9045379-9045990	ECC-1	luminal epithelium:	n/a	n/a
13	JUND	chr8:9045510-9045884	K562	blood:	n/a	chr8:9045669-9045680
14	CEBPB	chr8:9044895-9046045	HCT-116	colon:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
15	CEBPB	chr8:9045348-9045822	MCF-7	breast:	n/a	n/a
16	RCOR1	chr8:9045415-9045829	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr8:9045415-9045898	ECC-1	luminal epithelium:	n/a	n/a
18	NR3C1	chr8:9045439-9046073	A549	lung:	n/a	n/a
19	MAX	chr8:9045476-9045823	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr8:9045458-9045853	MCF-7	breast:	n/a	n/a
21	JUN	chr8:9045477-9045891	Hela-S3	cervix:	n/a	n/a
22	CEBPB	chr8:9044944-9045804	K562	blood:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
23	FOS	chr8:9045468-9045862	MCF10A-Er-Src	breast:	n/a	n/a
24	CEBPB	chr8:9045413-9045877	ECC-1	luminal epithelium:	n/a	n/a
25	TCF12	chr8:9045380-9045911	A549	lung:	n/a	n/a
26	FOSL2	chr8:9045520-9045813	HepG2	liver:	n/a	n/a
27	MYC	chr8:9045382-9045934	MCF10A-Er-Src	breast:	n/a	n/a
28	CEBPB	chr8:9044936-9045790	HepG2	liver:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
29	CEBPB	chr8:9044981-9045732	H1-hESC	embryonic stem cell:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
30	CEBPB	chr8:9044944-9045778	IMR90	lung:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
31	FOSL2	chr8:9045505-9045751	A549	lung:	n/a	n/a
32	CEBPB	chr8:9045378-9045851	A549	lung:	n/a	n/a
33	JUND	chr8:9045530-9045787	H1-hESC	embryonic stem cell:	n/a	chr8:9045669-9045680
34	CEBPB	chr8:9045406-9045939	HCT-116	colon:	n/a	n/a
35	FOSL1	chr8:9045331-9045948	HCT-116	colon:	n/a	n/a
36	MYC	chr8:9045525-9045800	NB4	blood:	n/a	n/a
37	FOS	chr8:9044920-9045923	MCF10A-Er-Src	breast:	n/a	chr8:9045014-9045025 chr8:9045168-9045179
38	MAX	chr8:9045364-9045831	NB4	blood:	n/a	n/a
39	MYC	chr8:9045089-9045892	MCF10A-Er-Src	breast:	n/a	n/a
40	STAT3	chr8:9045451-9045896	MCF10A-Er-Src	breast:	n/a	n/a
41	FOS	chr8:9045403-9045921	MCF10A-Er-Src	breast:	n/a	n/a
42	CEBPB	chr8:9044938-9045804	A549	lung:	n/a	chr8:9045122-9045131 chr8:9045122-9045131 chr8:9045120-9045131 chr8:9045120-9045133 chr8:9045122-9045131
43	UBTF	chr8:9045595-9045625	K562	blood:	n/a	n/a
44	MEF2A	chr8:9045529-9045833	GM12878	blood:	n/a	n/a
45	JUND	chr8:9045279-9046050	HCT-116	colon:	n/a	chr8:9045669-9045680
46	STAT3	chr8:9045050-9045883	MCF10A-Er-Src	breast:	n/a	n/a
47	FOSL2	chr8:9045536-9045959	SK-N-SH	brain:	n/a	n/a
48	SPI1	chr8:9045531-9045874	HL-60	blood:	n/a	n/a
49	STAT3	chr8:9045510-9045805	Hela-S3	cervix:	n/a	n/a
50	TEAD4	chr8:9045354-9046009	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000248538	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73526165	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv610206	chr8:8961017-9162048	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1016574	chr8:9007186-9061281	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv539461	chr8:9007186-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv1018847	chr8:9017110-9216354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1022967	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv539462	chr8:9023771-9261351	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv890339	chr8:9029413-9110822	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv890340	chr8:9029413-9121398	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1025197	chr8:9037251-9116414	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9041200-9048200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:9041400-9047800	Weak transcription	Brain Anterior Caudate	brain
3	chr8:9043200-9048000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:9043200-9048800	Weak transcription	Esophagus	oesophagus
5	chr8:9044600-9046400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:9044800-9045800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:9045000-9045800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:9045000-9045800	Enhancers	Placenta	Placenta
9	chr8:9045000-9046000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:9045000-9046000	Flanking Active TSS	A549	lung
11	chr8:9045000-9046000	Enhancers	Hela-S3	cervix
12	chr8:9045000-9046200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:9045000-9046200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:9045000-9046400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:9045000-9046400	Enhancers	HMEC	breast
16	chr8:9045000-9046600	Enhancers	NHEK	skin
17	chr8:9045000-9046800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:9045000-9047000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:9045000-9047200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:9045200-9045800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:9045200-9046000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:9045200-9046200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:9045200-9046200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:9045400-9045800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr8:9045400-9045800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:9045400-9045800	Enhancers	HUVEC	blood vessel
27	chr8:9045400-9046000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:9045400-9046000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr8:9045400-9046000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr8:9045400-9046200	Enhancers	K562	blood
31	chr8:9045400-9046600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr8:9045400-9048400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr8:9045400-9048600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr8:9045600-9045800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:9045600-9045800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:9045600-9046000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr8:9045600-9046200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:9045600-9048600	Weak transcription	NH-A	brain

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