Variant report

Variant	rs73527765
Chromosome Location	chr11:71645039-71645040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71644522..71646628-chr11:71653948..71656589,2	MCF-7	breast:
2	chr11:71637669..71642330-chr11:71642595..71645155,5	K562	blood:
3	chr11:71643289..71645495-chr11:71647071..71649029,3	K562	blood:
4	chr11:71638377..71641678-chr11:71642670..71653439,17	MCF-7	breast:
5	chr11:71642632..71644871-chr11:71645034..71646537,2	K562	blood:

Variant related genes	Relation type
ENSG00000137522	Chromatin interaction
ENSG00000254469	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55747967	1.00[AMR][1000 genomes]
rs56380055	1.00[AMR][1000 genomes]
rs57920810	1.00[AMR][1000 genomes]
rs57956403	1.00[AMR][1000 genomes]
rs58461575	1.00[AMR][1000 genomes]
rs58779515	1.00[AMR][1000 genomes]
rs59647065	1.00[AMR][1000 genomes]
rs60828158	1.00[AMR][1000 genomes]
rs61248388	1.00[AMR][1000 genomes]
rs61285433	1.00[AMR][1000 genomes]
rs61740471	1.00[AMR][1000 genomes]
rs61889058	1.00[AMR][1000 genomes]
rs7123665	1.00[AMR][1000 genomes]
rs73527747	1.00[AMR][1000 genomes]
rs73537512	1.00[AMR][1000 genomes]
rs73537523	1.00[AMR][1000 genomes]
rs73543608	1.00[AMR][1000 genomes]
rs73543620	1.00[AMR][1000 genomes]
rs73543646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71641000-71671000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:71641200-71645400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:71641200-71648600	Weak transcription	Placenta	Placenta
4	chr11:71641200-71650000	Weak transcription	Colonic Mucosa	Colon
5	chr11:71641200-71670800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:71641200-71671400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:71641400-71645600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:71641400-71648600	Weak transcription	Primary T cells from cord blood	blood
9	chr11:71641400-71651600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:71641400-71652000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:71641400-71658000	Weak transcription	Lung	lung
12	chr11:71641400-71661600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:71641400-71670800	Weak transcription	Esophagus	oesophagus
14	chr11:71641400-71671000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:71641400-71671000	Weak transcription	Fetal Thymus	thymus
16	chr11:71641400-71671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:71641600-71645200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:71641600-71645200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:71641600-71645400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:71641600-71646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:71641600-71646800	Enhancers	Liver	Liver
22	chr11:71641600-71646800	Enhancers	HepG2	liver
23	chr11:71641600-71647600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:71641600-71647800	Weak transcription	NHEK	skin
25	chr11:71641600-71648200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:71641600-71648200	Weak transcription	Right Atrium	heart
27	chr11:71641600-71648400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:71641600-71648400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:71641600-71648600	Weak transcription	Fetal Stomach	stomach
30	chr11:71641600-71648600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:71641600-71648600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:71641600-71648800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:71641600-71649000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:71641600-71654400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:71641600-71654800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:71641600-71656800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:71641600-71658000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:71641600-71659600	Weak transcription	Fetal Kidney	kidney
39	chr11:71641600-71670800	Weak transcription	Spleen	Spleen
40	chr11:71641600-71671400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:71641600-71671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:71641600-71671600	Weak transcription	Brain Germinal Matrix	brain
43	chr11:71641600-71671600	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:71641600-71673400	Weak transcription	NHLF	lung
45	chr11:71641800-71645200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:71641800-71646600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr11:71641800-71647800	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:71641800-71647800	Weak transcription	Ovary	ovary
49	chr11:71641800-71648600	Weak transcription	Adipose Nuclei	Adipose
50	chr11:71641800-71648600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links