Variant report

Variant	rs73528019
Chromosome Location	chr11:86356891-86356892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501624	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501625	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12099044	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292032	1.00[ASN][1000 genomes]
rs17149180	1.00[ASN][1000 genomes]
rs17149223	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149226	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149234	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149238	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149242	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149245	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149305	0.87[AMR][1000 genomes]
rs17149308	0.87[AMR][1000 genomes]
rs17149311	0.87[AMR][1000 genomes]
rs1945141	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156532	1.00[ASN][1000 genomes]
rs4614483	1.00[ASN][1000 genomes]
rs55642252	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55763915	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55894714	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56048600	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56056120	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56272084	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56304616	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58173252	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58968600	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59227416	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59339534	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59415795	1.00[ASN][1000 genomes]
rs61182121	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61230561	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61248687	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61372386	1.00[ASN][1000 genomes]
rs7103556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961775	1.00[ASN][1000 genomes]
rs73514376	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526075	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73526086	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7940187	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7940523	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7941124	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86340000-86357200	Weak transcription	Fetal Brain Female	brain
2	chr11:86341600-86358800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:86344000-86373800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:86346600-86359600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86348800-86361600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:86352600-86360600	Weak transcription	A549	lung
7	chr11:86355200-86357000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:86355600-86370400	Weak transcription	Psoas Muscle	Psoas
9	chr11:86355800-86357000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:86355800-86357000	Enhancers	Pancreas	Pancrea
11	chr11:86356200-86361800	Weak transcription	Left Ventricle	heart
12	chr11:86356400-86357000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:86356400-86357000	ZNF genes & repeats	Fetal Stomach	stomach
14	chr11:86356600-86361800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:86356800-86357000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86356800-86357000	Enhancers	Lung	lung
17	chr11:86356800-86369600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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