Variant report

Variant	rs73530267
Chromosome Location	chr13:85165128-85165129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73530270	1.00[AFR][1000 genomes]
rs73530290	1.00[AFR][1000 genomes]
rs73532222	1.00[AFR][1000 genomes]
rs73532238	1.00[AFR][1000 genomes]
rs73532269	1.00[AFR][1000 genomes]
rs73532272	1.00[AFR][1000 genomes]
rs73532275	1.00[AFR][1000 genomes]
rs73532286	1.00[AFR][1000 genomes]
rs73532288	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832666	chr13:85028182-85193796	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85164000-85167400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:85164600-85165400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr13:85164600-85166600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:85164600-85167000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:85164600-85167000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:85164600-85167400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:85164800-85165200	Enhancers	Brain Germinal Matrix	brain
8	chr13:85164800-85166400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:85164800-85166600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:85164800-85166800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:85165000-85166200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links