Variant report

Variant	rs73532256
Chromosome Location	chr16:31241093-31241094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17839572	0.85[AFR][1000 genomes]
rs57108507	0.80[AFR][1000 genomes]
rs60534953	1.00[AFR][1000 genomes]
rs61733965	0.96[AFR][1000 genomes]
rs67676356	0.96[AFR][1000 genomes]
rs68121698	0.85[AFR][1000 genomes]
rs7202897	1.00[AFR][1000 genomes]
rs73530287	0.96[AFR][1000 genomes]
rs73530295	1.00[AFR][1000 genomes]
rs73530302	1.00[AFR][1000 genomes]
rs73532204	1.00[AFR][1000 genomes]
rs73532236	0.85[AFR][1000 genomes]
rs73532252	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
6	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
7	nsv905742	chr16:31102321-31247924	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	188 gene(s)	inside rSNPs	diseases
8	nsv905745	chr16:31216517-31247924	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31231000-31246800	Weak transcription	Psoas Muscle	Psoas
2	chr16:31237600-31241800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr16:31239600-31241200	Enhancers	Ovary	ovary
4	chr16:31239600-31241200	Enhancers	Spleen	Spleen
5	chr16:31239600-31242800	Enhancers	K562	blood
6	chr16:31240200-31241200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:31240200-31241200	Enhancers	HMEC	breast
8	chr16:31240400-31241600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:31240600-31241200	Enhancers	Fetal Intestine Large	intestine
10	chr16:31240600-31241200	Enhancers	Fetal Muscle Leg	muscle
11	chr16:31240600-31241800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:31240800-31241200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr16:31240800-31241200	Bivalent Enhancer	Placenta	Placenta
14	chr16:31240800-31241400	Enhancers	Pancreas	Pancrea
15	chr16:31241000-31245000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr16:31241000-31245600	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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